TCONS_00053104-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00053104-protein
Unique NameTCONS_00053104-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length166

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00053104-protein ID=TCONS_00053104-protein|Name=TCONS_00053104-protein|organism=Clytia hemisphaerica|type=polypeptide|length=166bp
MERVIIFLALIGLASSMSIKFNPCESSRGKSTASNISLIIEPCTAEPCKL
IKGQSSSIAVHFTPANVAKTLAVSVHAKIASFWVPYSIDKPDACKDSGLT
CPLAAGTEADYEYSLKVSTAYPSISLPLEWKITDDTGASPVCVVFPIVVT
SSAASMYEEESLALIP
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_033541XLOC_033541Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00053104TCONS_00053104Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003172ML_dom
IPR033916ML_Npc2-like
IPR014756Ig_E-set
Vocabulary: Biological Process
TermDefinition
GO:0032367intracellular cholesterol transport
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0032367 intracellular cholesterol transport
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003172MD-2-related lipid-recognition domainSMARTSM00737pgtp_13coord: 21..147
e-value: 1.2E-20
score: 84.6
IPR003172MD-2-related lipid-recognition domainPFAMPF02221E1_DerP2_DerF2coord: 18..147
e-value: 6.6E-22
score: 78.3
NoneNo IPR availableGENE3D2.60.40.770coord: 17..151
e-value: 1.7E-28
score: 99.3
IPR033916ML domain, Npc2 likeCDDcd00916Npc2_likecoord: 21..147
e-value: 2.24354E-32
score: 112.787
IPR014756Immunoglobulin E-setSUPERFAMILY81296E set domainscoord: 19..150

Blast
[Close]
BLAST of TCONS_00053104-protein vs. Swiss-Prot (Human)
Match: NPC2 (Epididymal secretory protein E1 OS=Homo sapiens GN=NPC2 PE=1 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 1.206e-22
Identity = 50/138 (36.23%), Postives = 70/138 (50.72%), Query Frame = 0 
Query:   14 ASSMSIKFNPCESSRGKSTASNISLIIEPCTAEPCKLIKGQSSSIAVHFTPANVAKTLAVSVHAKIASFWVPYSIDKPDACKDSGLTCPLAAGTEADYEYSLKVSTAYPSISLPLEWKITDDTGASPVCVVFPIVVTS 151
            A +  ++F  C S  G     N+S    PC  +PC+L KGQS S+ V FT    +K+    VH  +    VP+ I +PD CK SG+ CP+       Y   L V + YPSI L +EW++ DD   S  C   P+ + S
Sbjct:   17 AQAEPVQFKDCGSVDGVIKEVNVS----PCPTQPCQLSKGQSYSVNVTFTSNIQSKSSKAVVHGILMGVPVPFPIPEPDGCK-SGINCPIQKDKTYSYLNKLPVKSEYPSIKLVVEWQLQDDKNQSLFCWEIPVQIVS 149
The following BLAST results are available for this feature:
BLAST of TCONS_00053104-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NPC21.206e-2236.23Epididymal secretory protein E1 OS=Homo sapiens GN... [more]
back to top