TCONS_00053308-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00053308-protein
Unique NameTCONS_00053308-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length329

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00053308-protein ID=TCONS_00053308-protein|Name=TCONS_00053308-protein|organism=Clytia hemisphaerica|type=polypeptide|length=329bp
MSAAAKQLRLPPMPKISDLIRMYGLRAKKQLSQNFILDLNVTDKIARKAD
VFDCHVIEVGSGPGSLTRSLLNNGVKHVHGVEIDERFLPSLEVLRDASHN
HLTIHHQDIMTFDMMSPLRNKKSVHMRQWESEEVPNVRLVGNLPFAVSIP
LLLQWLQAVAERKGPFQLGRVPMTLVFQKEVGQNLVAEEFNYHRSRLSIM
AQTYCHVTKEMVLRSTVFTPEPQVDAWLIHFVPRIQPKVDVSFDILEQVV
KAIFSKRKKIIRHSIKELFPQRGHLADQLLHDIDIEPTVRPHQLTLEQYN
SISTRFAQLCQEHDLTTEPLKINKPNVIR
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_033646XLOC_033646Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00053308TCONS_00053308Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR020598rRNA_Ade_methylase_Trfase_N
IPR011530rRNA_adenine_dimethylase
IPR001737KsgA/Erm
IPR023165rRNA_Ade_diMease-like
IPR020596rRNA_Ade_Mease_Trfase_CS
IPR029063SAM-dependent_MTases
Vocabulary: Biological Process
TermDefinition
GO:0000154rRNA modification
GO:0006364rRNA processing
Vocabulary: Molecular Function
TermDefinition
GO:0008649rRNA methyltransferase activity
GO:0000179rRNA (adenine-N6,N6-)-dimethyltransferase activity
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000154 rRNA modification
biological_process GO:0006364 rRNA processing
molecular_function GO:0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity
molecular_function GO:0008649 rRNA methyltransferase activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR020598Ribosomal RNA adenine methylase transferase, N-terminalSMARTSM00650rADcneu6coord: 41..235
e-value: 3.3E-41
score: 152.9
IPR011530Ribosomal RNA adenine dimethylaseTIGRFAMTIGR00755TIGR00755coord: 26..304
e-value: 5.6E-53
score: 177.8
NoneNo IPR availableGENE3D3.40.50.150coord: 6..247
e-value: 1.4E-50
score: 171.1
NoneNo IPR availableCDDcd02440AdoMet_MTasescoord: 56..165
e-value: 3.75287E-6
score: 43.1875
IPR001737Ribosomal RNA adenine methyltransferase KsgA/ErmPFAMPF00398RrnaADcoord: 26..306
e-value: 1.2E-41
score: 142.4
IPR001737Ribosomal RNA adenine methyltransferase KsgA/ErmPROSITEPS51689SAM_RNA_A_N6_MTcoord: 27..310
score: 56.346
IPR023165rRNA adenine dimethylase-likeGENE3D1.10.8.100coord: 248..312
e-value: 6.8E-16
score: 57.7
IPR020596Ribosomal RNA adenine methylase transferase, conserved sitePROSITEPS01131RRNA_A_DIMETHcoord: 56..84
IPR029063S-adenosyl-L-methionine-dependent methyltransferaseSUPERFAMILY53335S-adenosyl-L-methionine-dependent methyltransferasescoord: 23..309

Blast
[Close]
BLAST of TCONS_00053308-protein vs. Swiss-Prot (Human)
Match: TFB1M (Dimethyladenosine transferase 1, mitochondrial OS=Homo sapiens GN=TFB1M PE=1 SV=1)

HSP 1 Score: 268.855 bits (686), Expect = 1.374e-88
Identity = 138/317 (43.53%), Postives = 202/317 (63.72%), Query Frame = 0 
Query:    1 MSAAAK--QLRLPPMPKISDLIRMYGLRAKKQLSQNFILDLNVTDKIARKA-DVFDCHVIEVGSGPGSLTRSLLNNGVKHVHGVEIDERFLPSLEVLRDASHNHLTIHHQDIMTFDMMSPLRNKKSVHMRQWESEEVPNVRLVGNLPFAVSIPLLLQWLQAVAERKGPFQLGRVPMTLVFQKEVGQNLVAEEFNYHRSRLSIMAQTYCHVTKEMVLRSTVFTPEPQVDAWLIHFVPRIQPKVDVSFDILEQVVKAIFSKRKKIIRHSIKELFP--QRGHLADQLLHDIDIEPTVRPHQLTLEQYNSISTRFAQLCQE 312
            M+A+ K    RLPP+P I ++I++  L+A KQLSQNF+LDL +TDKI RKA ++ + +V EVG GPG +TRS+LN  V  +  VE D RF+P L++L DA+   L I H D++TF +            R WE ++ PNV ++GNLPF+VS PL+++WL+ ++ R GPF  GR  MTL FQKEV + L A   +  RSRLS+MAQ  C+V     +    F P+P+VD  ++HF P IQPK++  F ++E+VV+ +F  R+K     ++ LFP  QR     +LL   DI+PT+RP QL++  + S+   + ++C E
Sbjct:    1 MAASGKLSTCRLPPLPTIREIIKLLRLQAAKQLSQNFLLDLRLTDKIVRKAGNLTNAYVYEVGPGPGGITRSILNADVAELLVVEKDTRFIPGLQMLSDAAPGKLRIVHGDVLTFKVEKAFSESLK---RPWE-DDPPNVHIIGNLPFSVSTPLIIKWLENISCRDGPFVYGRTQMTLTFQKEVAERLAANTGSKQRSRLSVMAQYLCNVRHIFTIPGQAFVPKPEVDVGVVHFTPLIQPKIEQPFKLVEKVVQNVFQFRRKYCHRGLRMLFPEAQRLESTGRLLELADIDPTLRPRQLSISHFKSLCDVYRKMCDE 313
The following BLAST results are available for this feature:
BLAST of TCONS_00053308-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TFB1M1.374e-8843.53Dimethyladenosine transferase 1, mitochondrial OS=... [more]
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