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Sequence
The following sequences are available for this feature:
polypeptide sequence >TCONS_00053309-protein ID=TCONS_00053309-protein|Name=TCONS_00053309-protein|organism=Clytia hemisphaerica|type=polypeptide|length=826bp
MVDSTEVSHEERSASPVHRDTVDGSQETVVEDNIEKPGKDQFFNGLETLE
VDNILDFRNEQDCRQYLVSFKSWIAEEYLQDYNELLIKFWKQKDEEQLQN
GNVPKDIPSKDKRSPQTHFAIQEDASTESSSSINIDNQSLSTETVDVERT
YESEELLPPSFNRLERKPMTGGIQATELPRLDSSEDTSYEWTLEKENHNV
VHKKRKLKSLDDIVRKITKQNDQVIHPAVTEDGLDVMRGYQGHVNFEESV
TSEQKHVDEETKRGSLKTVSPELLNGKAETIGESQLTNGKHSPSNAHQEE
QSPRKTQQTPAVKSRQRYHKCRYCSTLYSDPALLERHENSHFGRAIAPAP
PPLVPVTDEKDAYSRHPHYGKNHRKEDESMIRKPIRNLLSRMCSNPESMN
QELLLQKARRNIDIICPLCKVKFNKVLHFQQHFRISHPNTVNFICKGCHI
VFLSNEEFENHDCTHVVTRGGYSTPCQRVDSTEFQHNDRAIQPQHHQYRC
NLCSRTFNNRYHLNEHLEDHNDGSPPVCQICGKYFERMDSLNSHIIEHHA
EMRRVNDRAFNGNRSPCASVTMGNEPRMCSKHGSQHTSPRNSEQSPSRSS
SASYDSNEQQPYEPVRMIPTSRHHNENKPSYPYDQNKPITKQRFPEEDYY
HPRSLPKEQSHIKPDPFMQLVPSPAQQPPQNAIKVSTPRGGGTPFNQQNG
DPSVLICSKCGENFSSPSLYDIHMQSHKELFECEKCHKTFSVRSQYDFHM
QSHENSKSHKCPYCHRSFSMKGNLRRHIRIHTNEAPYECPICFQRFRRSD
GLKGHIKRHETLGESAPTDLLPSQAS Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
This polypeptide derives from the following transcript feature(s):
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| IPR013087 | Zinc finger C2H2-type | SMART | SM00355 | c2h2final6 | coord: 443..465
e-value: 22.0
score: 10.3
coord: 705..727
e-value: 0.033
score: 23.4
coord: 319..341
e-value: 0.77
score: 18.8
coord: 526..548
e-value: 0.16
score: 21.1
coord: 759..781
e-value: 2.1E-4
score: 30.7
coord: 414..437
e-value: 0.23
score: 20.6
coord: 731..753
e-value: 0.056
score: 22.6
coord: 787..809
e-value: 0.0055
score: 25.9
coord: 498..520
e-value: 9.2E-4
score: 28.5 |
| IPR013087 | Zinc finger C2H2-type | PROSITE | PS00028 | ZINC_FINGER_C2H2_1 | coord: 528..549 |
| IPR013087 | Zinc finger C2H2-type | PROSITE | PS00028 | ZINC_FINGER_C2H2_1 | coord: 416..437 |
| IPR013087 | Zinc finger C2H2-type | PROSITE | PS00028 | ZINC_FINGER_C2H2_1 | coord: 733..753 |
| IPR013087 | Zinc finger C2H2-type | PROSITE | PS00028 | ZINC_FINGER_C2H2_1 | coord: 500..520 |
| IPR013087 | Zinc finger C2H2-type | PROSITE | PS00028 | ZINC_FINGER_C2H2_1 | coord: 445..465 |
| IPR013087 | Zinc finger C2H2-type | PROSITE | PS00028 | ZINC_FINGER_C2H2_1 | coord: 761..781 |
| IPR013087 | Zinc finger C2H2-type | PROSITE | PS00028 | ZINC_FINGER_C2H2_1 | coord: 707..727 |
| IPR013087 | Zinc finger C2H2-type | PROSITE | PS00028 | ZINC_FINGER_C2H2_1 | coord: 789..809 |
| IPR013087 | Zinc finger C2H2-type | PROSITE | PS00028 | ZINC_FINGER_C2H2_1 | coord: 321..341 |
| IPR013087 | Zinc finger C2H2-type | PROSITE | PS50157 | ZINC_FINGER_C2H2_2 | coord: 526..553
score: 9.619 |
| IPR013087 | Zinc finger C2H2-type | PROSITE | PS50157 | ZINC_FINGER_C2H2_2 | coord: 731..758
score: 11.843 |
| IPR013087 | Zinc finger C2H2-type | PROSITE | PS50157 | ZINC_FINGER_C2H2_2 | coord: 319..346
score: 8.933 |
| IPR013087 | Zinc finger C2H2-type | PROSITE | PS50157 | ZINC_FINGER_C2H2_2 | coord: 705..727
score: 9.078 |
| IPR013087 | Zinc finger C2H2-type | PROSITE | PS50157 | ZINC_FINGER_C2H2_2 | coord: 498..525
score: 12.279 |
| IPR013087 | Zinc finger C2H2-type | PROSITE | PS50157 | ZINC_FINGER_C2H2_2 | coord: 787..809
score: 9.702 |
| IPR013087 | Zinc finger C2H2-type | PROSITE | PS50157 | ZINC_FINGER_C2H2_2 | coord: 759..786
score: 14.815 |
| IPR013087 | Zinc finger C2H2-type | SUPERFAMILY | 57667 | beta-beta-alpha zinc fingers | coord: 497..548 |
| IPR013087 | Zinc finger C2H2-type | SUPERFAMILY | 57667 | beta-beta-alpha zinc fingers | coord: 714..768 |
| IPR013087 | Zinc finger C2H2-type | SUPERFAMILY | 57667 | beta-beta-alpha zinc fingers | coord: 757..809 |
| None | No IPR available | PFAM | PF00096 | zf-C2H2 | coord: 707..727
e-value: 0.0066
score: 16.7
coord: 759..781
e-value: 1.9E-5
score: 24.8
coord: 498..520
e-value: 0.0016
score: 18.7 |
| None | No IPR available | GENE3D | 3.30.160.60 | | coord: 542..630
e-value: 0.36
score: 10.3 |
| None | No IPR available | GENE3D | 3.30.160.60 | | coord: 632..716
e-value: 0.019
score: 14.7 |
| None | No IPR available | GENE3D | 3.30.160.60 | | coord: 511..541
e-value: 3.7E-13
score: 49.1
coord: 772..815
e-value: 6.0E-17
score: 61.3 |
| None | No IPR available | GENE3D | 3.30.160.60 | | coord: 478..510
e-value: 0.042
score: 13.5 |
| None | No IPR available | GENE3D | 3.30.160.60 | | coord: 757..771
e-value: 1.9E-7
score: 30.7 |
| None | No IPR available | PFAM | PF12874 | zf-met | coord: 416..434
e-value: 0.011
score: 16.0 |
| None | No IPR available | PFAM | PF13912 | zf-C2H2_6 | coord: 528..550
e-value: 0.0011
score: 18.7 |
| None | No IPR available | GENE3D | 3.30.160.60 | | coord: 191..330
e-value: 0.069
score: 12.8 |
| None | No IPR available | GENE3D | 2.40.50.40 | | coord: 44..102
e-value: 0.0025
score: 17.1 |
| None | No IPR available | GENE3D | 2.10.69.10 | | coord: 424..469
e-value: 0.0049
score: 16.6 |
| None | No IPR available | GENE3D | 3.30.160.60 | | coord: 331..423
e-value: 0.0025
score: 17.6
coord: 717..739
e-value: 1.6E-8
score: 34.2 |
| None | No IPR available | PFAM | PF13894 | zf-C2H2_4 | coord: 787..809
e-value: 3.3E-4
score: 21.1 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 121..145 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 566..683 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1..26 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 247..315 |
| None | No IPR available | CDD | cd00024 | CHROMO | coord: 47..92
e-value: 0.00194942
score: 36.0879 |
| IPR013083 | Zinc finger, RING/FYVE/PHD-type | GENE3D | 3.30.40.10 | | coord: 740..756
e-value: 1.9E-5
score: 24.1 |
Blast
BLAST of TCONS_00053309-protein vs. Swiss-Prot (Human)
Match: ZN569 (Zinc finger protein 569 OS=Homo sapiens GN=ZNF569 PE=1 SV=1) HSP 1 Score: 100.523 bits (249), Expect = 1.024e-21 Identity = 110/434 (25.35%), Postives = 172/434 (39.63%), Query Frame = 0
Query: 416 CPLCKVKFNKVLHFQQHFRISHPNTVNFICKGCHIVFLSNEEFENHDCTHVVTRGGYSTPCQRVDSTEFQHND-RAIQPQHHQYRCNLCSRTFNNRYHLNEHLEDHNDGSPPVCQICGKYFERMDSLNSHIIEHHAEMRRVNDR---AFNGNRSPCASVTM--GNEPRMCSKHGS-------------QHTSPRNSEQSPSRSSSASYDSN---------EQQPYEP-------VRMIPTSRH---HNENKPSYPYDQNKPITKQRFPEEDYYHPRSLPKEQSHIKPDPFMQLVPSPAQQPPQNAIKVSTPRGGGTPFNQQNGDPSVLICSKCGENFSSPSLYDIHMQSH--KELFECEKCHKTFSVRSQYDFHMQSHENSKSHKCPYCHRSFSMKGNLRRHIRIHTNEAPYECPICFQRFRRSDGLKGHIKRH 809
C C+ F+ +H++I H ++ C C F+ H H + C++ S + D I Y CN C + F+ + L H + H P C CGK F R+ SL H+ H E D+ AF+ V + G +P C++ G HT + E R + S+ N ++PYE ++M RH H KP + K +++ + E+ H P+ A QN I G P++ C++CG+ FS + +H++SH ++ +EC+KC K FS S + HM+SH K + C C ++FS + +L H+R HT E PYEC C + F +S L HI+ H
Sbjct: 216 CSNCRKAFSHKEKLIKHYKI-HSREQSYKCNECGKAFIKMSNLIRHQRIHTGEKPYACKECEKSFSQKSNLIDHEKIHTGEKPYECNECGKAFSQKQSLIAHQKVHTGEKPYACNECGKAFPRIASLALHMRSHTGEKPYKCDKCGKAFSQFSMLIIHVRIHTGEKPYECNECGKAFSQSSALTVHMRSHTGEKPYECKECRKA-FSHKKNFITHQKIHTREKPYECNECGKAFIQMSNLVRHQRIHTGEKPYICKECGKAFSQK---------SNLIAHEKIHSGEKPYECNECGKAFSQKQNFITHQKVHTGEKPYD----------CNECGKAFSQIASLTLHLRSHTGEKPYECDKCGKAFSQCSLLNLHMRSHTGEKPYVCNECGKAFSQRTSLIVHMRGHTGEKPYECNKCGKAFSQSSSLTIHIRGH 628
The following BLAST results are available for this feature:
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