TCONS_00053396-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00053396-protein
Unique NameTCONS_00053396-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length486

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00053396-protein ID=TCONS_00053396-protein|Name=TCONS_00053396-protein|organism=Clytia hemisphaerica|type=polypeptide|length=486bp
MAARNGRNHTCKLCYDSYSKKILERIPRKLECLHTFCTGCIQKLTNLQGH
TIECPLCFMMTITPFKGVDHLPLNNDIIRELSTRKPFQKCNFCIKTTYPP
RSATLHCINCEKLYCGSCSDQIHVKEENLDHIIRLSNSMDDVQLSRQSSA
KSGVVRSPQLEEKPANKVSSLVCSEHHQVLSLYCQKDKVRCCIQCRLSPQ
HQAHDCDFLKKSDEQDKNTLVDWHVQLEDLIDKQSKLRLCVQKTMEEVKK
NTKTTQENIRKTFWSLKTLLDDVERDVNKEVENISQNKINQLQNQCSSMI
EITSNAKTVSRLCEQSLDLDYFEMLVEKKKLEGDVTKAFEYLSRYSTPCE
ASDLFVQFPSHESILSDIKSLPYIVKVPPPPEKFVCELQADSSEVTLCWS
SPSRMTFVYPINLFAVYASTGKDDSLELVKKINKKTMKLPLSWNKFHGKY
LMQFHVTAINIIGESAPSLPSSIRLIKNRPSILNGL
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_033707XLOC_033707Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00053396TCONS_00053396Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR000315Znf_B-box
IPR013083Znf_RING/FYVE/PHD
IPR013783Ig-like_fold
IPR027370Znf-RING_LisH
IPR017907Znf_RING_CS
IPR003961FN3_dom
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0005622 intracellular
molecular_function GO:0005515 protein binding
molecular_function GO:0008270 zinc ion binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 11..57
e-value: 1.0E-6
score: 38.3
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 11..57
score: 11.884
IPR001841Zinc finger, RING-typeCDDcd00162RINGcoord: 10..57
e-value: 6.41578E-4
score: 36.6548
IPR000315B-box-type zinc fingerSMARTSM00336bboxneu5coord: 85..136
e-value: 0.9
score: 7.9
coord: 168..209
e-value: 0.08
score: 18.8
IPR000315B-box-type zinc fingerPROSITEPS50119ZF_BBOXcoord: 168..205
score: 9.2
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 138..219
e-value: 9.0E-4
score: 18.5
coord: 2..137
e-value: 2.9E-9
score: 36.4
IPR013783Immunoglobulin-like foldGENE3D2.60.40.10coord: 374..482
e-value: 1.2E-7
score: 31.4
IPR027370RING-type zinc-finger, LisH dimerisation motifPFAMPF13445zf-RING_UBOXcoord: 11..55
e-value: 4.2E-6
score: 26.6
IPR017907Zinc finger, RING-type, conserved sitePROSITEPS00518ZF_RING_1coord: 32..41
NoneNo IPR availableCDDcd00021BBOXcoord: 172..209
e-value: 0.00439409
score: 34.1852
NoneNo IPR availableSUPERFAMILY57845B-box zinc-binding domaincoord: 167..222
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 7..72
IPR003961Fibronectin type IIICDDcd00063FN3coord: 378..474
e-value: 4.2141E-4
score: 37.4759
IPR003961Fibronectin type IIISUPERFAMILY49265Fibronectin type IIIcoord: 376..480

Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00053396-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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