TCONS_00053410-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00053410-protein
Unique NameTCONS_00053410-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length610

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00053410-protein ID=TCONS_00053410-protein|Name=TCONS_00053410-protein|organism=Clytia hemisphaerica|type=polypeptide|length=610bp
MFHFMDKMMKEVKPFENDMTGGKQNKENMTTNFLNEGEDIGNEPVNLTKP
NLNSTSLSSEPLGGDHERVNHGKKRVSWAQDNEEATPHDEKEKALKKRVF
CIMLTLYALAFLASFAYWVQSGVLPYLTRRVGMTAELFGLMESSYALYQM
ITSPIYGRLGDIFGIRILYMLSEICSSITFGSLAFANSVPALFLTRVPAL
FMHSVQCSYMILTDISTKKRRADLIGKLGVLHGLGMICGSVTGGLITHAF
DEQTAAIVAAISNLLSVLIVIIFIPQNTKDIRRLVTELQECDASPRHEVK
PTVNKCDETFEKTEIRNTPTKNTTSPQKRKRALSRGSDQNSKNIESENAQ
CSSAMSPEHNKKFHQESEVASTETDIQSTTKVTTDDHEQQMNQVTMNQNN
RNEHNNENESESIPTFKAMIAVLQFKNVKFLLLIKIIIAFPFSLLYSMFS
MAIMDYYHLGPRVNGLILGYIGILTIVVQGVIVGLFTKRFTDAFIVKTMI
FVNTIGFLFLIVSTEILILVVVVIPLAIGGSVSHIVLLAVMTKIVPPEYS
GTALGFIFALHAIVRAVTPTLGGLTFATIGWPFFGVIGYLFHFVLLIYVT
MFGRDEQYDS
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_033717XLOC_033717Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00053410TCONS_00053410Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001958Tet-R_TetA/multi-R_MdtG
IPR011701MFS
IPR020846MFS_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005215transporter activity
Vocabulary: Biological Process
TermDefinition
GO:0055085transmembrane transport
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055085 transmembrane transport
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0005215 transporter activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001958Tetracycline resistance protein TetA/multidrug resistance protein MdtGPRINTSPR01035TCRTETAcoord: 225..247
score: 41.3
coord: 138..157
score: 36.0
IPR011701Major facilitator superfamilyPFAMPF07690MFS_1coord: 108..288
e-value: 1.6E-23
score: 83.1
coord: 431..604
e-value: 1.6E-8
score: 33.8
NoneNo IPR availableGENE3D1.20.1250.20coord: 413..607
e-value: 1.7E-14
score: 53.1
NoneNo IPR availableGENE3D1.20.1250.20coord: 79..352
e-value: 6.4E-28
score: 96.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 34..70
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 310..387
IPR020846Major facilitator superfamily domainPROSITEPS50850MFScoord: 102..606
score: 16.078
IPR020846Major facilitator superfamily domainCDDcd06174MFScoord: 103..602
e-value: 4.1876E-21
score: 92.7621
IPR020846Major facilitator superfamily domainSUPERFAMILY103473MFS general substrate transportercoord: 93..290
coord: 410..604

Blast
[Close]
BLAST of TCONS_00053410-protein vs. Swiss-Prot (Human)
Match: S22AI (Solute carrier family 22 member 18 OS=Homo sapiens GN=SLC22A18 PE=1 SV=3)

HSP 1 Score: 82.8037 bits (203), Expect = 7.882e-17
Identity = 64/205 (31.22%), Postives = 113/205 (55.12%), Query Frame = 0 
Query:  102 IMLTLYALAFLASFAYWVQSGVLPYLTRRVGMTAELFGLMESSYALYQMITSPIYGRLGDIFGIRILYMLSEICSSITFGSLAFANSVPAL------FLTRVPALFMHSVQCSYMILTDISTKKRRADLIGKLGVLHGLGMICGSVTGGLITHAFDEQTAAIVAAISNLLSVLIVIIFIPQNTKDIRRLVTELQE-CDASPRHEV 299
            ++L  Y LA       ++Q  ++PYL+R++G+ +  FG +++++ + Q++  P++GR  D  G R    LS + +   +  L  A S PAL      F +R+P   MH++  + M++TD+S  + R   +G+LG+  G+G+I GS+ GG +  A+  Q  AI+AA++ LL  ++    IP +TK  +   T+ Q      PR  V
Sbjct:   25 VILLTYVLAATELTCLFMQFSIVPYLSRKLGLDSIAFGYLQTTFGVLQLLGGPVFGRFADQRGARAALTLSFLAALALY-LLLAAASSPALPGVYLLFASRLPGALMHTLPAAQMVITDLSAPEERPAALGRLGLCFGVGVILGSLLGGTLVSAYGIQCPAILAALATLLGAVLSFTCIPASTKGAK---TDAQAPLPGGPRASV 225
The following BLAST results are available for this feature:
BLAST of TCONS_00053410-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
S22AI7.882e-1731.22Solute carrier family 22 member 18 OS=Homo sapiens... [more]
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