TCONS_00053448-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00053448-protein
Unique NameTCONS_00053448-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length526

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00053448-protein ID=TCONS_00053448-protein|Name=TCONS_00053448-protein|organism=Clytia hemisphaerica|type=polypeptide|length=526bp
MEGETIKAEPEDAPLPPPPMPPIVNGVASSGEEAANIKTEDIKIEEGDKE
EAVNVGNGFTGKVVRISNVSSGATLQQLATLFGYLGTIQDIRMYPTEENP
TIKIRLCYIKFDTSEQCGVAQHLTNTVFIDKPLIVVPMNREEIPEEKDCQ
HLISTINAYALAAGTGFLPQFFPQDTSNGAGLPGLPPPPIITTTTDPVEI
EEIKRTIFVEDIADDLSAEQLMAFFSGVGEVKYLRFSKGEDGDRRFALIE
FSNLESVPTALQYNGVLFGGKCLTVHYSKHPIVKPESERIASGKSGVRKS
QRDAVKRPSSIEPARPRIFTSRSRSRSRSPSRSRRRSPSRERRRRRSRSR
TRSPRRRRSPTRSPRRRSPRRRSPRRSRSRSIGRSSRRRSKSRTRSPRRR
RRSRSRSRDRRRRRRSPTKSPSRSPRRRKRKSKSRSKSRSTSPKRKSSRK
SNSRSPDRERSSSSKKKKKDKKKEKEKVDEKSDDKELKNLLSKIKTFEEK
THGDKKEKKGSEEPASSKKEKEKDKE
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_033742XLOC_033742Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00053448TCONS_00053448Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 468..488
NoneNo IPR availableGENE3D3.30.70.330coord: 192..285
e-value: 1.8E-14
score: 53.1
NoneNo IPR availableGENE3D3.30.70.330coord: 50..138
e-value: 3.7E-5
score: 23.3
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..27
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 286..526
NoneNo IPR availableCDDcd12259RRM_SRSF11_SREK1coord: 63..137
e-value: 1.53365E-30
score: 112.753
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 206..276
e-value: 1.8E-10
score: 50.8
coord: 63..136
e-value: 0.0041
score: 26.4
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 64..124
e-value: 9.0E-5
score: 22.1
coord: 207..273
e-value: 2.4E-8
score: 33.5
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 205..280
score: 13.413
IPR000504RNA recognition motif domainSUPERFAMILY54928RNA-binding domain, RBDcoord: 61..142
IPR000504RNA recognition motif domainSUPERFAMILY54928RNA-binding domain, RBDcoord: 196..288

Blast
[Close]
BLAST of TCONS_00053448-protein vs. Swiss-Prot (Human)
Match: SRS11 (Serine/arginine-rich splicing factor 11 OS=Homo sapiens GN=SRSF11 PE=1 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 8.431e-23
Identity = 43/100 (43.00%), Postives = 69/100 (69.00%), Query Frame = 0 
Query:   62 KVVRISNVSSGATLQQLATLFGYLGTIQDIRMYPTEENPT-IKIRLCYIKFDTSEQCGVAQHLTNTVFIDKPLIVVPMNREEIPEEKDCQHLISTINAYA 160
            +V++++NVS  A+ +Q+ TLFG+LG I ++R++P +++P  +  R+C++KF   +   VAQHLTNTVF+D+ LIVVP     IP+E     L++  NA A
Sbjct:   33 EVIQVTNVSPSASSEQMRTLFGFLGKIDELRLFPPDDSPLPVSSRVCFVKFHDPDSAVVAQHLTNTVFVDRALIVVPYAEGVIPDEAKALSLLAPANAVA 132
The following BLAST results are available for this feature:
BLAST of TCONS_00053448-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SRS118.431e-2343.00Serine/arginine-rich splicing factor 11 OS=Homo sa... [more]
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