TCONS_00053677-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00053677-protein
Unique NameTCONS_00053677-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length383

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00053677-protein ID=TCONS_00053677-protein|Name=TCONS_00053677-protein|organism=Clytia hemisphaerica|type=polypeptide|length=383bp
YKSTEIVTVIKSFGRDNRIPNLSYNDMTIGIYFNRRNYKTYIAMSFRHGM
SVDDITLSHIEKAHQNMKDLSSTLFIETPLVHGMENRLRGEIPNVDSLSL
KLECLQSTGSFKIRGVVNQFLNLRDEDRQKKRTLVTMSAGNYGKAFAFVS
NQEHMPGVVYMPNEAPKDRQTTIESYGCTVNLSPVQQLVENVNNEIERTG
GMYFHSYDDPFLILGNASAGMELMAQTSRQQQPDIVLVCCGGGGLCAGVA
AALKLSDGWKDTRIYGVEAENVPKMYEALKADGPVPFNRKPTIATGLAPP
TAGEMTYKMIKKYTEGILLVSEDELKRAMKTLFSLGLVVEPSGAAAFAAL
QSNKVPEAEGKKVTVIVTGGNVTLKDLTQHIGL
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_033854XLOC_033854Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00053677TCONS_00053677Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001926TrpB-like_PLP-dep
IPR000634Ser/Thr_deHydtase_PyrdxlP-BS
Vocabulary: Biological Process
TermDefinition
GO:0006520cellular amino acid metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0030170pyridoxal phosphate binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006520 cellular amino acid metabolic process
molecular_function GO:0030170 pyridoxal phosphate binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001926Tryptophan synthase beta subunit-like PLP-dependent enzymePFAMPF00291PALPcoord: 91..369
e-value: 1.0E-62
score: 212.1
IPR001926Tryptophan synthase beta subunit-like PLP-dependent enzymeSUPERFAMILY53686Tryptophan synthase beta subunit-like PLP-dependent enzymescoord: 54..376
NoneNo IPR availableGENE3D3.40.50.1100coord: 95..197
e-value: 1.8E-19
score: 69.6
NoneNo IPR availableGENE3D3.40.50.1100coord: 198..380
e-value: 2.2E-37
score: 127.9
IPR000634Serine/threonine dehydratase, pyridoxal-phosphate-binding sitePROSITEPS00165DEHYDRATASE_SER_THRcoord: 103..116

Blast
[Close]
BLAST of TCONS_00053677-protein vs. Swiss-Prot (Human)
Match: SRR (Serine racemase OS=Homo sapiens GN=SRR PE=1 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 2.121e-39
Identity = 104/335 (31.04%), Postives = 174/335 (51.94%), Query Frame = 0 
Query:   55 ITLSHIEKAHQNMKDLSSTLFIETPLVHGMENRLRGEIPNVDSLSLKLECLQSTGSFKIRGVVNQFLNL-RDEDRQKKRTLVTMSAGNYGKAFAFVSNQEHMPGVVYMPNEAPKDRQTTIESYGCT-VNLSPVQQLVENVNNEI-ERTGGMYFHSYDDPFLILGNASAGMELMAQTSRQQQPDIVLVCCGGGGLCAGVAAALKLSDGWKDTRIYGVEAENVPKMYEALKADGPVPFNRKP--TIATGLAPPTAGEMTYKMIKKYTEGILLVSEDELKRAMKTLFS-LGLVVEPSGAAAFAALQSN--KVPEAEGKKVTVIVTGGNVTLKDLTQHI 381
            I+ + +EKAH N++D   ++ +   L   + N+L G      +L  K E  Q TGSFKIRG +N   +L  D   +K + +VT S+GN+G+A  + +  E +P  + +P  AP  ++  I++YG + V   P  +  ENV   + E T G+  H   +P +I G  +  +E++ Q       D ++V  GGGG+ AG+A  +K        ++Y  E  N    Y++ K  G +  N  P  TIA G+   + G  T+ +I+   + I  V+EDE+K A + ++  + L++EP+     AA+ S   +    E K + ++++GGNV   DLT  I
Sbjct:    7 ISFADVEKAHINIRD---SIHLTPVLTSSILNQLTGR-----NLFFKCELFQKTGSFKIRGALNAVRSLVPDALERKPKAVVTHSSGNHGQALTYAAKLEGIPAYIVVPQTAPDCKKLAIQAYGASIVYCEPSDESRENVAKRVTEETEGIMVHPNQEPAVIAGQGTIALEVLNQVPLV---DALVVPVGGGGMLAGIAITVKALK--PSVKVYAAEPSNADDCYQS-KLKGKLMPNLYPPETIADGVK-SSIGLNTWPIIRDLVDDIFTVTEDEIKCATQLVWERMKLLIEPTAGVGVAAVLSQHFQTVSPEVKNICIVLSGGNV---DLTSSI 323
The following BLAST results are available for this feature:
BLAST of TCONS_00053677-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SRR2.121e-3931.04Serine racemase OS=Homo sapiens GN=SRR PE=1 SV=1[more]
back to top