TCONS_00053689-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00053689-protein
Unique NameTCONS_00053689-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length965

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00053689-protein ID=TCONS_00053689-protein|Name=TCONS_00053689-protein|organism=Clytia hemisphaerica|type=polypeptide|length=965bp
MVKDNILWFVLAIILLRTIGFVDAIFFPPGTCFLAGRQIQKHQSVNISHC
TECFCKGDRSIECKTRHLNGSLETLCTNCMDMPSPSCSFCQQDIPKNKSF
PVDVGAGDCISCNCSSDGINCQYFNQFLCTGDLSCGLELVTYSSCHICLD
PLDGSRKQNGEFWKTADGIDCSCLDGNNQCFKPVEVEDMFLIIECRQCTP
WKYQQTFHQPKDCSFNENVMTHNSVSHLQIYNVHHCFDCACYMGNYLCVT
EGSYKFGKIPIFFKHGCHNEMKCNELLLNENVRNYCGGNPLESQCKGNYE
WNTPGCKLICNETLVNPNHVVIDQWCDLLKISKSCEACPMSEDEFVAKFG
HLVIMCNATGQYIWKDQICDGKEDCVNSEDETNCKEYYCRYDQDRFGYIW
PTTQVNTQKNISCKDAVITLKDNFTKIEGLTGNFTRKCELNVNGASMERT
ECACSSLMPLPKLTFRDINSTYQSVLQDVEVVYQHVLSSPTNEWHYQQMY
RLMNITLKKLILDSVNGGHNEKWKNKTAPIIVLIMETCSAIRKKYSFCPY
ENEEEIDAMDHIAHHILNFDIFRSFRIQFNPFVTSLVKALGAEFFFEKRL
SLMKNEDFDQRRKNSLSIYGVGNHNGSDITLGNSGMKDNLNTVGQSNHER
KTDLDMLEEVISAINIAALVLGLIIFRIIRKNTLKIFIHQNLMLSFLLKA
ITYKIPLWFVEDLETKSNAGCFAVSILSYFFTLSTFSWMMVEGINIIIIV
VFVFKGNRNYHKHYLVIGYGFPIVMTGTFVAIFHQQFKDAIKCTILDGVY
QWLLRGPMTFILVINLVFFILILAKIRKSAVKRKSMVSRSTSAENKSSPK
TFLVLVPLLGIPFILAPFVEYNIYIAYTFVIMNGLTGVYIFVGHVILDES
ITKDLRKRYFEPAKGKFFGVSCLCFDKRTKENSSNKPNTAESSSENKCQD
SEVNKREGNHANTEK
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_033861XLOC_033861Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00053689TCONS_00053689Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000832GPCR_2_secretin-like
IPR002172LDrepeatLR_classA_rpt
IPR017981GPCR_2-like
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
Vocabulary: Molecular Function
TermDefinition
GO:0004930G-protein coupled receptor activity
GO:0005515protein binding
GO:0004888transmembrane signaling receptor activity
Vocabulary: Biological Process
TermDefinition
GO:0007186G-protein coupled receptor signaling pathway
GO:0007166cell surface receptor signaling pathway
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007166 cell surface receptor signaling pathway
biological_process GO:0007186 G-protein coupled receptor signaling pathway
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0004930 G-protein coupled receptor activity
molecular_function GO:0005515 protein binding
molecular_function GO:0004888 transmembrane signaling receptor activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000832GPCR, family 2, secretin-likePRINTSPR00249GPCRSECRETINcoord: 656..680
score: 23.8
coord: 848..868
score: 40.68
coord: 687..711
score: 32.68
coord: 761..786
score: 22.43
coord: 802..827
score: 28.81
coord: 723..746
score: 24.93
IPR000832GPCR, family 2, secretin-likePFAMPF000027tm_2coord: 654..889
e-value: 2.2E-37
score: 128.6
IPR002172Low-density lipoprotein (LDL) receptor class A repeatSMARTSM00192LDLa_2coord: 348..386
e-value: 0.0055
score: 24.4
IPR002172Low-density lipoprotein (LDL) receptor class A repeatSUPERFAMILY57424LDL receptor-like modulecoord: 354..388
NoneNo IPR availableGENE3D4.10.400.10coord: 352..386
e-value: 9.0E-6
score: 25.3
NoneNo IPR availableGENE3D1.20.1070.10coord: 636..949
e-value: 3.4E-23
score: 81.5
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 929..965
NoneNo IPR availableCDDcd00112LDLacoord: 358..384
e-value: 0.00562758
score: 34.875
NoneNo IPR availableSUPERFAMILY81321Family A G protein-coupled receptor-likecoord: 673..907
IPR017981GPCR, family 2-likePROSITEPS50261G_PROTEIN_RECEP_F2_4coord: 651..898
score: 27.362

Blast
[Close]
BLAST of TCONS_00053689-protein vs. Swiss-Prot (Human)
Match: AGRL2 (Adhesion G protein-coupled receptor L2 OS=Homo sapiens GN=ADGRL2 PE=1 SV=2)

HSP 1 Score: 108.612 bits (270), Expect = 7.461e-24
Identity = 90/291 (30.93%), Postives = 145/291 (49.83%), Query Frame = 0 
Query:  660 VISAINIAALVLGLIIFRIIRKNTLKIFIHQNLMLSFLLKAITYKIPLWFVEDLETKSNAGCFAVSILSYFFTLSTFSWMMVEGINIIIIVVFVFKGNRNYHKHYLVIGYGFPIVMTGTFVAIFHQQFKDAIKCTI-LDGVYQWLLRGPMTFILVINLVFFILILAKIRKSAVKRKSMVSRSTSAEN-KSSPKTFLVLVPLLGI--PFILAPFVEYNIYIAYTFVIMNGLTGVYIFVGHVILDESITKDLRKRYFEPAKGKFFGVSCLCFDKRTKE-NSSNKPNTAESSSE 945
            VIS + +A  +     FR ++ +  +  IH+NL ++  +    + I +      +TK    C   + L +FF L+ F+WM +EG+ + +++V VF+   +  K+Y V GY FP  + G   AI ++ +     C + +D  + W   GP+TFI+++N++F ++ L K+ K +   K   SR    EN KS       L+ LLG+   F L    E  I +AY F I N   GV+IF+ H  L     K +RK Y     GK F  S  C    T+  +SS K +T  +S+ 
Sbjct:  856 VISLVCLAICIFTFCFFRGLQSD--RNTIHKNLCINLFIAEFIFLIGI-----DKTKYAIACPIFAGLLHFFFLAAFAWMCLEGVQLYLMLVEVFESEYSRKKYYYVAGYLFPATVVGVSAAIDYKSYGTEKACWLHVDNYFIWSFIGPVTFIILLNIIFLVITLCKMVKHSNTLKPDSSR---LENIKSWVLGAFALLCLLGLTWSFGLLFINEETIVMAYLFTIFNAFQGVFIFIFHCALQ----KKVRKEY-----GKCFRHSYCCGGLPTESPHSSVKASTTRTSAR 1127
The following BLAST results are available for this feature:
BLAST of TCONS_00053689-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
AGRL27.461e-2430.93Adhesion G protein-coupled receptor L2 OS=Homo sap... [more]
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