TCONS_00054354-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00054354-protein
Unique Name	TCONS_00054354-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	514

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00054354-protein ID=TCONS_00054354-protein|Name=TCONS_00054354-protein|organism=Clytia hemisphaerica|type=polypeptide|length=514bp
MAYGQELLLDRTIFKMKKSAFLIDNSHKMEGQKAKEKLKTKWKDLYSSCS
FDGFHYIFDERGFLRIFWLLMVLGATALSIVLFYGVIEEYYNFKSHTSIE
EVLSNDKVEFPTVTICNINAVSKRKIEKAGYNSSVEEIVSFYQDLREGHF
NANKSNKVLEELKANGLTKMGDLLKHFEYTFGEIMEDSVLKDIAPRPCMF
KDRECNKDEFTEVISAHYGLCYQFNSIYLEMNRLYANEAGEGAGLRLYLN
IDEEDLLVSNVPFTGLQVFVHPFGEPFESAIARRVPISPGSMNYIHIDYR
QWELLESPYASACASKNYNLVKKIVPYSQSMCSVDCTMSKMMDKCGCVSE
EFANHLEDKNKTCKYNQIQCVEQMLGNLQQMLHTCRVQCPRQCLVTKYGI
STGQTAMGNSKVYKMLKQKHNKTIDEGYAFINKNVFGIDVTFSDIVYLKE
TMSPAQNWISVLSTIGGSLGLAMGCSVVTFIEFIVFGIQALYWYCKYKLS
DDCTSPQKANAIQT

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_034273	XLOC_034273	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00054354	TCONS_00054354	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR001873	ENaC

Vocabulary: **Biological Process**
Term	Definition
GO:0006814	sodium ion transport

Vocabulary: **Cellular Component**
Term	Definition
GO:0016020	membrane

Vocabulary: **Molecular Function**
Term	Definition
GO:0005272	sodium channel activity

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006814	sodium ion transport
cellular_component	GO:0016020	membrane
molecular_function	GO:0005272	sodium channel activity

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001873	Epithelial sodium channel	PRINTS	PR01078	AMINACHANNEL	coord: 389..409 score: 20.38 coord: 240..258 score: 32.84 coord: 338..355 score: 21.56 coord: 209..225 score: 40.94 coord: 195..206 score: 27.33 coord: 106..122 score: 44.94 coord: 65..82 score: 24.22 coord: 452..466 score: 33.07 coord: 327..338 score: 30.33 coord: 466..482 score: 50.12
IPR001873	Epithelial sodium channel	PFAM	PF00858	ASC	coord: 48..486 e-value: 5.4E-70 score: 236.5
None	No IPR available	GENE3D	1.10.287.770		coord: 405..492 e-value: 9.9E-12 score: 44.5
None	No IPR available	GENE3D	2.60.470.10		coord: 96..356 e-value: 1.5E-33 score: 116.0

Blast

[Close]

BLAST of TCONS_00054354-protein vs. Swiss-Prot (Human)
Match: ASIC1 (Acid-sensing ion channel 1 OS=Homo sapiens GN=ASIC1 PE=1 SV=3)

HSP 1 Score: 112.464 bits (280), Expect = 1.694e-26
Identity = 119/472 (25.21%), Postives = 204/472 (43.22%), Query Frame = 0

Query:   47 SSCSFDGFHYIFD-ERGFL-RIFWLLMVLGATALSIVLFYGVIEEYYNFKSHTSIEEVLSNDKVEFPTVTICNIN-----AVSKRKIEKAGYNSSVEEIVSFYQDLREGHFNANKSNKVLEEL--KAN--GLTKMGDLLKHFEYTFGEIMEDSVLKDIAPRPCMFKDRECNKDEFTEVISAHYGLCYQFNSIYLEMNRLYANEAGEGAGLRLYLNIDEEDLL-----VSNVPF-TGLQVFVHPFGEP-FESAIARRVPISPGSMNYIHIDYRQWELLESPYASACASKNYNLVKKIVPYSQSMCSVDCTMSKMMDKCGCVSEEFANHLEDKNKTCKYNQI-QCVEQMLGNLQQMLHTCRVQCPRQCLVTKYGISTGQTAMGNSKVYKMLKQKHNKTIDEGYAFINKNVFGIDVTFSDIVYLKETMSPAQNWISVLSTIGGSLGLAMGCSVVTFIEFIVFGIQALYWYCKYKL 499
            SS +  G  +IF  ER  L R  W L  LG+ A+ + +    ++ Y+++   T ++EV ++ ++ FP VT+CN+N      VSK  +  AG      E+++   +  E         K LE L  KAN          ++ F    G  + D +L       C F+   C+ ++F +V+   YG CY FNS      RL   + G G GL + L+I +++ L          F  G++V +H   EP F   +     ++PG   ++    ++   L  P+ +  A    + +     YS + C +DC    +++ C C       H+      C   Q  +C +  L  L +      V C   C +T+YG       + +    K L +K NK+      +I +N+  +D+ F  + Y       A     +L  IGG +GL +G S++T +E   +  + +    K+KL
Sbjct:   23 SSSTLHGLAHIFSYERLSLKRALWALCFLGSLAVLLCVCTERVQYYFHYHHVTKLDEVAAS-QLTFPAVTLCNLNEFRFSQVSKNDLYHAG------ELLALLNNRYEIPDTQMADEKQLEILQDKANFRSFKPKPFNMREFYDRAGHDIRDMLLS------CHFRGEVCSAEDF-KVVFTRYGKCYTFNSGRDGRPRLKTMKGGTGNGLEIMLDIQQDEYLPVWGETDETSFEAGIKVQIHSQDEPPFIDQLG--FGVAPGFQTFVACQEQRLIYLPPPWGTCKAVTMDSDLDFFDSYSITACRIDCETRYLVENCNCR----MVHMPGDAPYCTPEQYKECADPALDFLVEKDQEYCV-CEMPCNLTRYGKELSMVKIPSKASAKYLAKKFNKS----EQYIGENILVLDIFFEVLNYETIEQKKAYEIAGLLGDIGGQMGLFIGASILTVLELFDYAYEVI----KHKL 465

The following BLAST results are available for this feature:

BLAST of TCONS_00054354-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00054354-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
ASIC1	1.694e-26	25.21	Acid-sensing ion channel 1 OS=Homo sapiens GN=ASIC...	[more]

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TCONS_00054354-protein (polypeptide) - C. hemisphaerica