TCONS_00054576-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00054576-protein
Unique NameTCONS_00054576-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length654

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00054576-protein ID=TCONS_00054576-protein|Name=TCONS_00054576-protein|organism=Clytia hemisphaerica|type=polypeptide|length=654bp
MLKSKVFVKKTRRGKVVKVVREHYLRDDIWCGSKACTQCESTNADTEVLS
DLPGSVSSLCDFNHYVVLDTNAVLHQMDVLEDPVFQNVILLQTVLQEVKH
QSYTAYKRIRELISVKERNFYVFCNEHHRDTFVERRKSESPNDYNDRMIR
VASKWYNKHLKEFGKDDQDERISIVLLTNDIKNKERAMEEGIEVYTVHEY
VKSLRGYEHLVEKLARATFKSSDGKVLFPEHLPLSAIQTGLRTKKFLQGT
FFASRENYLEGTVRIPGREKEIFVQGLVSLNRAVQDDIVAVELLPESQWA
APSSLVLEEKDEELAEGEQEQIVQEQLEKTKKKQLRKESCRVVGIIKRNW
RPYCGMLSPNGNAKGLKHMFIAADRQIPRIMIESRQGELLRTKKIIVSID
AWPRNSRYPIGHYVRDLGDCGDKETENQVLLLEHDIHHQPFSQQVLDDLP
KMPWVITEQDLAERRDLRELNICSVDPPGCTDIDDALHCRVLENGNFECG
VHIADVTHFIKPNTHIDEEAQSRGTTVYLVDQRIDMIPELLSSNLCSLHE
KVERFAFSCVWELTPNADIVKVEFFKSIIASKAAMTYAEAQMMIDDTNRQ
DDVPTSLRQLNTLAKKLRQKRLDAGALTLASTEIRFNIDSETHDPIDLQS
KQLR
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_034397XLOC_034397Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00054576TCONS_00054576Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002716PIN_dom
IPR029060PIN_domain-like
IPR033771Rrp44_CSD1
IPR012340NA-bd_OB-fold
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002716PIN domainSMARTSM00670PIN_9coord: 64..185
e-value: 8.3E-17
score: 71.8
IPR002716PIN domainPFAMPF13638PIN_4coord: 66..196
e-value: 1.3E-13
score: 51.3
NoneNo IPR availableSMARTSM00955RNB_2coord: 464..654
e-value: 8.5E-41
score: 151.5
NoneNo IPR availablePFAMPF00773RNBcoord: 464..651
e-value: 3.8E-58
score: 197.2
NoneNo IPR availableCDDcd09862PIN_Rrp44coord: 9..200
e-value: 2.65529E-96
score: 295.33
IPR029060PIN domain-likeGENE3D3.40.50.1010coord: 61..208
e-value: 4.9E-23
score: 81.3
IPR029060PIN domain-likeSUPERFAMILY88723PIN domain-likecoord: 64..204
IPR033771Rrp44-like cold shock domainPFAMPF17216Rrp44_CSD1coord: 227..311
e-value: 1.3E-14
score: 54.0
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 225..316
coord: 367..415
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 393..644

Blast
[Close]
BLAST of TCONS_00054576-protein vs. Swiss-Prot (Human)
Match: RRP44 (Exosome complex exonuclease RRP44 OS=Homo sapiens GN=DIS3 PE=1 SV=2)

HSP 1 Score: 800.431 bits (2066), Expect = 0.000e+0
Identity = 384/660 (58.18%), Postives = 500/660 (75.76%), Query Frame = 0 
Query:    1 MLKSKVFVKKTRRGKVVKVVREHYLRDDIWCGSKACTQCESTNADTEVLSDLPGSVSSLCDFNHYVVLDTNAVLHQMDVLEDPVFQNVILLQTVLQEVKHQSYTAYKRIRELISVKERNFYVFCNEHHRDTFVERRKSESPNDYNDRMIRVASKWYNKHLKEFGKDDQDERISIVLLTNDIKNKERAMEEGIEVYTVHEYVKSLRGYEHLVEKLARATFKSSD---GKVLFPEHLPLSAIQTGLRTKKFLQGTFFASRENYLEGTVRIPG---REKEIFVQGLVSLNRAVQDDIVAVELLPESQWAAPSSLVLEEKDEELAEGEQEQIVQEQLEKTKKKQLRKESCRVVGIIKRNWRPYCGMLSPNGNAKGLKHMFIAADRQIPRIMIESRQGELLRTKKIIVSIDAWPRNSRYPIGHYVRDLGDCGDKETENQVLLLEHDIHHQPFSQQVLDDLPKMPWVITEQDLAERRDLRELNICSVDPPGCTDIDDALHCRVLENGNFECGVHIADVTHFIKPNTHIDEEAQSRGTTVYLVDQRIDMIPELLSSNLCSLHEKVERFAFSCVWELTPNADIVKVEFFKSIIASKAAMTYAEAQMMIDDTNRQDDVPTSLRQLNTLAKKLRQKRLDAGALTLASTEIRFNIDSETHDPIDLQSKQLR 654
            MLKSK F+KKTR G V+K+VREHYLRDDI CG+  C  C   +    +        SS+C   HY++ DTN +LHQ+DVLEDP  +NVI+LQTVLQEV+++S   YKRIR++ + +E++FY F NEHHR+T+VE+ + E+ ND NDR IRVA+KWYN+HLK+   D+Q   + ++ +TND +NKE+A+EEGI  +T  EYVKSL     L+++LA  + + ++   GK++F EHLPLS +Q G+++  +LQGTF ASRENYLE TV I G     KEI +QGL  LNRAV +DIVAVELLP+SQW APSS+VL ++ +   + E+E+  +  L+    +++ K + RVVGIIKRNWRPYCGMLS +   +  +H+F  AD++IPRI IE+RQ   L  ++IIV+ID WPRNSRYP GH+VR+LGD G+KETE +VLLLEHD+ HQPFSQ VL  LPKMPW ITE+D+  R DLR L ICSVDPPGCTDIDDALHCR LENGN E GVHIADV+HFI+P   +D+E+  RGTTVYL ++RIDM+PELLSSNLCSL   V+R AFSC+WE+  NA+I+K +F KS+I SKA++TYAEAQ+ ID  N  DD+ TSLR LN LAK L+++R++ GALTL+S E+RF++DSETHDPIDLQ+K+LR
Sbjct:    1 MLKSKTFLKKTRAGGVMKIVREHYLRDDIGCGAPGCAACGGAHEGPALEPQPQDPASSVCPQPHYLLPDTNVLLHQIDVLEDPAIRNVIVLQTVLQEVRNRSAPVYKRIRDVTNNQEKHFYTFTNEHHRETYVEQEQGENANDRNDRAIRVAAKWYNEHLKKMSADNQ---LQVIFITNDRRNKEKAIEEGIPAFTCEEYVKSLTANPELIDRLACLSEEGNEIESGKIIFSEHLPLSKLQQGIKSGTYLQGTFRASRENYLEATVWIHGDNEENKEIILQGLKHLNRAVHEDIVAVELLPKSQWVAPSSVVLHDEGQNEEDVEKEEETERMLKTAVSEKMLKPTGRVVGIIKRNWRPYCGMLSKSDIKESRRHLFTPADKRIPRIRIETRQASTLEGRRIIVAIDGWPRNSRYPNGHFVRNLGDVGEKETETEVLLLEHDVPHQPFSQAVLSFLPKMPWSITEKDMKNREDLRHLCICSVDPPGCTDIDDALHCRELENGNLEVGVHIADVSHFIRPGNALDQESARRGTTVYLCEKRIDMVPELLSSNLCSLKCDVDRLAFSCIWEMNHNAEILKTKFTKSVINSKASLTYAEAQLRIDSANMNDDITTSLRGLNKLAKILKKRRIEKGALTLSSPEVRFHMDSETHDPIDLQTKELR 657
The following BLAST results are available for this feature:
BLAST of TCONS_00054576-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RRP440.000e+058.18Exosome complex exonuclease RRP44 OS=Homo sapiens ... [more]
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