TCONS_00054639-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00054639-protein
Unique Name	TCONS_00054639-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	418

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00054639-protein ID=TCONS_00054639-protein|Name=TCONS_00054639-protein|organism=Clytia hemisphaerica|type=polypeptide|length=418bp
MGGQTTIVEPILFAYMFNNFILSPVEQQLVFRKTCFQNFNKSYCQILFES
KNETYKDDQNFLQEKTSQWDIYSNLVQMLPAIISTLVYTSWSNRIGRKRV
MILPMIGGTILTITLILNSYFEEWPLELLLIGSFLDGCFGQFVAIIASIY
SYAADVTSIEGRTKRTVILESMMFLGGVVSSAISGILLQKYGFIPTFLLV
LAMFAFQMIYWCFLQESYPPRPDQPKISFCQILKGEALTGAIRVVFKKRN
GNKRRTILLLYVVLLLFTSVYTGYGDVSVLYILHPPINFSSANIGYMYAQ
FNGLKFIGASFINYVFLHKLGIPDIRILTIFPLAFIGFCLTLAFTTTAWQ
VFASAAWGLGLGVGPGAIRGRLSKIVGRSEQGHLFAFIASTEIAIAFVVS
IAFNAIYKATVSISTKII

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_034419	XLOC_034419	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00054639	TCONS_00054639	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR011701	MFS
IPR020846	MFS_dom

Vocabulary: **Biological Process**
Term	Definition
GO:0055085	transmembrane transport

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral component of membrane

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0055085	transmembrane transport
cellular_component	GO:0016021	integral component of membrane

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	1.20.1250.20		coord: 6..227 e-value: 2.4E-19 score: 68.9
None	No IPR available	GENE3D	1.20.1250.20		coord: 240..415 e-value: 1.2E-8 score: 34.1
IPR011701	Major facilitator superfamily	PFAM	PF07690	MFS_1	coord: 76..391 e-value: 1.6E-24 score: 86.4
IPR020846	Major facilitator superfamily domain	CDD	cd06174	MFS	coord: 76..409 e-value: 3.8325E-10 score: 58.4793
IPR020846	Major facilitator superfamily domain	SUPERFAMILY	103473	MFS general substrate transporter	coord: 75..409

Blast

[Close]

BLAST of TCONS_00054639-protein vs. Swiss-Prot (Human)
Match: S46A3 (Solute carrier family 46 member 3 OS=Homo sapiens GN=SLC46A3 PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 5.510e-26
Identity = 110/422 (26.07%), Postives = 187/422 (44.31%), Query Frame = 0

Query:    8 VEPILFAYMFNNFILSPVEQQLVFRKTCFQNFNKSYCQILFESKNETYKDD-----QNFLQEKTSQWDIYSNLVQMLPAIISTLVYTSWSNRIGRKRVMILPMIGGTILTITLILNSYFEEWPLELLLIGSFLDGCFGQFVAIIASIYSYAAD-VTSIEGRTKRTVILESMMFLGGVVSSAISGILLQKYGFIPTFLLVLAMFAFQMIYWCFLQESYPPRPDQPKISFCQILKGEALTGAIRVVFKKRNGNKRRTILLLYVVLLLFTSVYTGYGDVSVLYILHPPINFSSANIGYMYAQFNGLKFIGASFINY---VFLHKLGIPDIRILTIFPLAFIGFCLTLAFTTTAWQVFASAAWGLGLGVGP--------GAIRGRLSKIVGRSEQGHLFAFIASTEIAIAFVVSIAFNAIYKATVS 412
            VEP +F   F   +  P+  Q V+R+   +  N ++      S+ E  K       Q  +Q+K S++++  ++  ++P ++ST +  S S+  GRK  MIL  +G    ++ L L  YF  +P +LL+  +F+    G +     + ++Y  D     + +T R  I++ ++ L   ++   SG  +++ GF  +FL++    A  +IY  F             ++       + L     ++FK  +G +R  + LL   ++ +  V  G   + +LY L  P+ ++   IGY      G     ASF+     ++L    + DI       +AFIG   T+  T  A   FAS    + L   P          +R  LSK+V  +EQG LFA IA  E          FN IY ATV+
Sbjct:    6 VEPAIFLSAFAMTLTGPLTTQYVYRRIWEETGNYTFSSDSNISECEKNKSSPIFAFQEEVQKKVSRFNLQMDISGLIPGLVSTFILLSISDHYGRKFPMILSSVGALATSVWLCLLCYF-AFPFQLLIASTFIGAFCGNYTTFWGACFAYIVDQCKEHKQKTIRIAIIDFLLGLVTGLTGLSSGYFIRELGFEWSFLIIAVSLAVNLIYILFFLGDPVKECSSQNVTMSCSEGFKNLFYRTYMLFKNASGKRRFLLCLLLFTVITYFFVVIGIAPIFILYELDSPLCWNEVFIGY------GSALGSASFLTSFLGIWLFSYCMEDIH------MAFIGIFTTM--TGMAMTAFASTTLMMFLARVPFLFTIVPFSVLRSMLSKVVRSTEQGTLFACIAFLETLGGVTAVSTFNGIYSATVA 412

The following BLAST results are available for this feature:

BLAST of TCONS_00054639-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00054639-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
S46A3	5.510e-26	26.07	Solute carrier family 46 member 3 OS=Homo sapiens ...	[more]

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TCONS_00054639-protein (polypeptide) - C. hemisphaerica