TCONS_00054640-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00054640-protein
Unique Name	TCONS_00054640-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	464

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00054640-protein ID=TCONS_00054640-protein|Name=TCONS_00054640-protein|organism=Clytia hemisphaerica|type=polypeptide|length=464bp
MVESRYVEPVLLGYMFFLYSAMTLSQQLVYRKTCIRQFNTSYCHLISESK
NETLYKHDSDLIQKETSQWIMYLSIIRTIPAVISTLVCTAYFDRVGRKRI
MIMPIIGATLVTISDLANSYYLSSSIVWMFFGAFLDGLFGQFASILASAF
AYLADTISVENRTRRVILLESMVFLGGCIAEIGTGQLLQHYGFLPPFIMV
LLVLVMVIIYWFFLRESYPPTDGDSKIGFFAIIREKLFKRGYKMISDQNT
VRRRKIILLWLYFFIALFMMAGSVSVLLLFILRPPISFSPANIGFFLAEA
QAIKFIGSLFANYILIRVLGWTDNSILLIYGITSMGFYLSLAFSSTTWHI
YLLAIWNAGTGLGAPAVRGKLSKMFSKEDQGVLFSLIGCIETSAALVAGP
VASAIYKSTVSEIPNAVFFIFTGCAGIITCFVFAIYHLDKSEKKYEELNE
EEDGEESGVKAINS

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_034420	XLOC_034420	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00054640	TCONS_00054640	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR011701	MFS
IPR020846	MFS_dom

Vocabulary: **Biological Process**
Term	Definition
GO:0055085	transmembrane transport

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral component of membrane

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0055085	transmembrane transport
cellular_component	GO:0016021	integral component of membrane

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 438..458
None	No IPR available	GENE3D	1.20.1250.20		coord: 9..224 e-value: 6.4E-18 score: 64.2 coord: 235..462 e-value: 1.4E-16 score: 59.8
IPR011701	Major facilitator superfamily	PFAM	PF07690	MFS_1	coord: 63..398 e-value: 7.0E-23 score: 81.0
IPR020846	Major facilitator superfamily domain	PROSITE	PS50850	MFS	coord: 6..440 score: 8.698
IPR020846	Major facilitator superfamily domain	CDD	cd06174	MFS	coord: 66..436 e-value: 4.88278E-14 score: 70.8057
IPR020846	Major facilitator superfamily domain	SUPERFAMILY	103473	MFS general substrate transporter	coord: 66..451

Blast

[Close]

BLAST of TCONS_00054640-protein vs. Swiss-Prot (Human)
Match: S46A3 (Solute carrier family 46 member 3 OS=Homo sapiens GN=SLC46A3 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.084e-20
Identity = 110/464 (23.71%), Postives = 206/464 (44.40%), Query Frame = 0

Query:    6 YVEPVLLGYMFFLYSAMTLSQQLVYRK--------TCIRQFNTSYCHLISESKNETLYKHDSDLIQKETSQWIMYLSIIRTIPAVISTLVCTAYFDRVGRKRIMIMPIIGATLVTISDLANSYYLSSSIVWMFFGAFLDGLFGQFASILASAFAYLADTISV-ENRTRRVILLESMVFLGGCIAEIGTGQLLQHYGFLPPFIMVLLVLVMVIIY-WFFLRESYPPTDGDSKIGFFAIIREKLFKRGYKMISDQNTVRRRKIILLWLYFFIALFMMAGSVSVLLLFILRPPISFSPANIGFFLAEAQAIKFIGSLFANYILIRVLGWTDNSILLIY-GI-TSMGFYLSLAFSSTTWHIYLLAIWNAGTGLGAPAVRGKLSKMFSKEDQGVLFSLIGCIETSAALVAGPVASAIYKSTVSEIPNAVFFIFTGCAGIITCFVFAIYHLDKSEKKYEELNEEEDGEES 457
            +VEP +    F +     L+ Q VYR+        T     N S C    ++K+  ++    + +QK+ S++ + + I   IP ++ST +  +  D  GRK  MI+  +GA L T   L    Y +     +    F+    G + +   + FAY+ D     + +T R+ +++ ++ L   +  + +G  ++  GF   F+++ + L + +IY  FFL +        +     +   + LF R Y +  + +  RR  + LL        F++ G   + +L+ L  P+ ++   IG+  A   A     S   +++ I +  +    I + + GI T+M      AF+STT  ++L  +    T +    +R  LSK+    +QG LF+ I  +ET   + A    + IY +TV+  P   F +  G   +    +  +     +E  YE L +EE  E++
Sbjct:    5 FVEPAIFLSAFAMTLTGPLTTQYVYRRIWEETGNYTFSSDSNISECE---KNKSSPIFAFQEE-VQKKVSRFNLQMDISGLIPGLVSTFILLSISDHYGRKFPMILSSVGA-LATSVWLCLLCYFAFPFQLLIASTFIGAFCGNYTTFWGACFAYIVDQCKEHKQKTIRIAIIDFLLGLVTGLTGLSSGYFIRELGFEWSFLIIAVSLAVNLIYILFFLGDPVKECSSQNVTMSCSEGFKNLFYRTYMLFKNASGKRRFLLCLLLFTVITYFFVVIGIAPIFILYELDSPLCWNEVFIGYGSALGSA-----SFLTSFLGIWLFSYCMEDIHMAFIGIFTTMTGMAMTAFASTTLMMFLARVPFLFTIVPFSVLRSMLSKVVRSTEQGTLFACIAFLETLGGVTAVSTFNGIYSATVAWYPGFTFLLSAGLLLLPAISLCVVKCTSWNEGSYELLIQEESSEDA 458

The following BLAST results are available for this feature:

BLAST of TCONS_00054640-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00054640-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
S46A3	1.084e-20	23.71	Solute carrier family 46 member 3 OS=Homo sapiens ...	[more]

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TCONS_00054640-protein (polypeptide) - C. hemisphaerica