TCONS_00054641-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00054641-protein
Unique Name	TCONS_00054641-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	496

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00054641-protein ID=TCONS_00054641-protein|Name=TCONS_00054641-protein|organism=Clytia hemisphaerica|type=polypeptide|length=496bp
MRKTTIIEPILFGFMFCRYMLLDTEDQLIYMKTCLRAFNTSFCDAIYQNG
TAFKAEQSELQNESAKWKVYLSIVRTIPPVIMTIIYSSWSDYVGRKNVIV
LPVIGSSISAMSFILNSQYIQSPVYYILVGELFAAPFGNFVAMISATFCY
AADITPISFRTQRTVILESMIYIAGAIGHFSGGQILYNFGFQYVYGLTLF
IDILQIIYWMFIEESYESTVQQKKKSLLEMFTLETFTKVFKFLSKSRDGN
RRSIIWTLFVCFSFSSLYFMTLNSATILYLLHTPFQFLPTQIGYFLGGTL
LLKFLGSLFINLVFVHCLKMRDFYVMLISFXVFVHCLKMRDFYVMLISFT
TYTGLFISMAAAKNDWQIYSAGAWSFGVGVAIAVIRGKLSKIAAFDEQGR
LFSLISSVEVLVSLFSGVTITSIYKTTVDIEPAFVFYLVGASSILPFCLT
LYLIKLENEDRKREDCCPAAFEGTPLLKSQTFNKESNDDYSSTDNL

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_034421	XLOC_034421	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00054641	TCONS_00054641	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR011701	MFS
IPR020846	MFS_dom

Vocabulary: **Biological Process**
Term	Definition
GO:0055085	transmembrane transport

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral component of membrane

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0055085	transmembrane transport
cellular_component	GO:0016021	integral component of membrane

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	1.20.1250.20		coord: 246..467 e-value: 9.6E-10 score: 37.6
None	No IPR available	GENE3D	1.20.1250.20		coord: 10..240 e-value: 3.6E-14 score: 52.0
IPR011701	Major facilitator superfamily	PFAM	PF07690	MFS_1	coord: 66..415 e-value: 1.2E-13 score: 50.6
IPR020846	Major facilitator superfamily domain	CDD	cd06174	MFS	coord: 80..454 e-value: 1.27856E-7 score: 51.1605
IPR020846	Major facilitator superfamily domain	SUPERFAMILY	103473	MFS general substrate transporter	coord: 62..458

Blast

[Close]

BLAST of TCONS_00054641-protein vs. Swiss-Prot (Human)
Match: PCFT (Proton-coupled folate transporter OS=Homo sapiens GN=SLC46A1 PE=1 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 8.871e-19
Identity = 106/410 (25.85%), Postives = 184/410 (44.88%), Query Frame = 0

Query:   59 ELQNESAKWKVYLSIVRTIPPVIMTIIYSSWSDYVGRKNVIVLPVIGSSISAMSFILNSQYIQSPVYYILVGELFAAPFGNFVAMISATFCYAADITPISFRTQRTVILESMIYIAGAIGHFSGGQILYNFGFQYVYGLTLFIDILQIIYWMFIEESYESTVQQKKKSLLEMFTLETFTKVFK-FLSKSRDGNRRSIIWTLFVCFSFSSLYFMTLNSATILYLLHTPFQFLPTQIGYFLGGTLLLKFLGSLFINLVFVHCLKMRDFYVMLISFXVFVHCLKMRDFYVMLIS---FTTYTGLFISMAAAKNDWQIYSAGAWSFGVGVAIAVIRGKLSKIAAFDEQGRLFSLISSVEVLVSLFSGVTITSIYKTTVDIEPAFVFYLVGASSILPFCLTLYLIKLENEDRKRE 464
            E++  ++ W +Y+++   +  +  + +  +WSD VGR+ ++VL  +G  + A+  +   Q +Q  V Y ++G +  A  G+F  +++A+F   AD++    RT R  +LE+ I +AG +    GG  L   G+   + L L + I   +Y  F    +  T+++ K +   +FT      + + +++ + + +R+ +       F   +++F   +  T LY L TP  +    IGY       L +L SL    +  +CL   D +V  I      + L M  F    I+   FT Y  LF+S+                    V   VIR KLSK+    EQG LFS ++ V  L  L +     S+Y  T++    F F L     ++P  L   +  LE  D   E
Sbjct:   77 EVETLTSHWTLYMNVGGFLVGLFSSTLLGAWSDSVGRRPLLVLASLGLLLQALVSVFVVQ-LQLHVGYFVLGRILCALLGDFGGLLAASFASVADVSSSRSRTFRMALLEASIGVAGMLASLLGGHWLRAQGYANPFWLALALLIAMTLYAAFC---FGETLKEPKST--RLFTFRHHRSIVQLYVAPAPEKSRKHLALYSLAIFVVITVHFGAQDILT-LYELSTPLCWDSKLIGYG-SAAQHLPYLTSLLALKLLQYCLA--DAWVAEIGLA--FNILGMVVFAFATITPLMFTGYGLLFLSL--------------------VITPVIRAKLSKLVRETEQGALFSAVACVNSLAMLTASGIFNSLYPATLNFMKGFPFLLGAGLLLIPAVL---IGMLEKADPHLE 451

The following BLAST results are available for this feature:

BLAST of TCONS_00054641-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00054641-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
PCFT	8.871e-19	25.85	Proton-coupled folate transporter OS=Homo sapiens ...	[more]

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TCONS_00054641-protein (polypeptide) - C. hemisphaerica