TCONS_00054708-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00054708-protein
Unique NameTCONS_00054708-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length146

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00054708-protein ID=TCONS_00054708-protein|Name=TCONS_00054708-protein|organism=Clytia hemisphaerica|type=polypeptide|length=146bp
KRMIKFILLVNKQGHTRFSNYYDESIKREERSWIEAEIVRKCLTRNEKQC
SFLEYRNYRVVYRRYASLFFIVGIDEKENELAIYEFIHNLVEILDRYFRG
VVRIIITLDFSICLIHLFDRSHQLPRGYFFCPLYPTKTVPVLFSHL
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_034469XLOC_034469Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00054708TCONS_00054708Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR022775AP_mu_sigma_su
IPR011012Longin-like_dom
Vocabulary: Biological Process
TermDefinition
GO:0006810transport
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006810 transport
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR022775AP complex, mu/sigma subunitPFAMPF01217Clat_adaptor_scoord: 3..110
e-value: 2.6E-29
score: 101.9
NoneNo IPR availableGENE3D3.30.450.60coord: 1..119
e-value: 3.7E-35
score: 120.3
IPR011012Longin-like domainSUPERFAMILY64356SNARE-likecoord: 3..115

Blast
[Close]
BLAST of TCONS_00054708-protein vs. Swiss-Prot (Human)
Match: AP4S1 (AP-4 complex subunit sigma-1 OS=Homo sapiens GN=AP4S1 PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 1.966e-38
Identity = 55/109 (50.46%), Postives = 83/109 (76.15%), Query Frame = 0 
Query:    3 MIKFILLVNKQGHTRFSNYYDESIKREERSWIEAEIVRKCLTRNEKQCSFLEYRNYRVVYRRYASLFFIVGIDEKENELAIYEFIHNLVEILDRYFRGVVRIIITLDFS 111
            MIKF L+VNKQG TR S YY E +   +R+ +E E+++ CL+R+ +QCSF+EY++++++YR+YA+LF +VG+++ ENE+AIYEFIHN VE+LD YF  V  + I  +  
Sbjct:    1 MIKFFLMVNKQGQTRLSKYY-EHVDINKRTLLETEVIKSCLSRSNEQCSFIEYKDFKLIYRQYAALFIVVGVNDTENEMAIYEFIHNFVEVLDEYFSRVSELDIMFNLD 108
The following BLAST results are available for this feature:
BLAST of TCONS_00054708-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
AP4S11.966e-3850.46AP-4 complex subunit sigma-1 OS=Homo sapiens GN=AP... [more]
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