TCONS_00054750-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00054750-protein
Unique NameTCONS_00054750-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length141

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00054750-protein ID=TCONS_00054750-protein|Name=TCONS_00054750-protein|organism=Clytia hemisphaerica|type=polypeptide|length=141bp
GVPNGFALGSVEGRVAMQYINPTDPKDNFTFKCHRSDITSGQVQDIYAVN
DIVFHPQIGTLATVGSDGKYSFWDKDARTKLKTSENCGQSITACCFNAEG
NIFAYSTGYDWTKGHEFYNPNQKPAIYLRSCADEMKPKTKK
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_034494XLOC_034494Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00054750TCONS_00054750Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR015943WD40/YVTN_repeat-like_dom
IPR017986WD40_repeat_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR015943WD40/YVTN repeat-like-containing domainGENE3D2.130.10.10coord: 2..141
e-value: 7.2E-24
score: 83.8
IPR017986WD40-repeat-containing domainSUPERFAMILY50978WD40 repeat-likecoord: 4..114

Blast
[Close]
BLAST of TCONS_00054750-protein vs. Swiss-Prot (Human)
Match: RAE1L (mRNA export factor OS=Homo sapiens GN=RAE1 PE=1 SV=1)

HSP 1 Score: 208.379 bits (529), Expect = 1.465e-67
Identity = 99/141 (70.21%), Postives = 116/141 (82.27%), Query Frame = 0 
Query:    3 PNGFALGSVEGRVAMQYINPTDP-KDNFTFKCHRSDITSGQV-QDIYAVNDIVFHPQIGTLATVGSDGKYSFWDKDARTKLKTSENCGQSITACCFNAEGNIFAYSTGYDWTKGHEFYNPNQKPAIYLRSCADEMKPKTKK 141
            P GFALGS+EGRVA+ YINP +P KDNFTFKCHRS+ T+    QDIYAVN I FHP  GTLATVGSDG++SFWDKDARTKLKTSE   Q I+ACCFN  GNIFAY++ YDW+KGHEFYNP +K  I+LR+ A+E+KP+ KK
Sbjct:  228 PTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSYDWSKGHEFYNPQKKNYIFLRNAAEELKPRNKK 368
The following BLAST results are available for this feature:
BLAST of TCONS_00054750-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RAE1L1.465e-6770.21mRNA export factor OS=Homo sapiens GN=RAE1 PE=1 SV... [more]
back to top