TCONS_00054809-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00054809-protein
Unique NameTCONS_00054809-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length514

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00054809-protein ID=TCONS_00054809-protein|Name=TCONS_00054809-protein|organism=Clytia hemisphaerica|type=polypeptide|length=514bp
MASLEVESADVIRLVQQYLKENNLRRTLQTLQEETTITLNTVDSVESFVA
DINNGHWDIVLQAIQSLKLPDKTLIDLYEQIVVELIELRELGAARSLLRQ
TDPMLMLKKHSADRYLRLENLLARSYFDPREAYPEGSSKEKRRNAIAQAL
AGEVNVVPPSRLMALLGQALKWQQYQGLLPPGTSIDLFRGKAAMKGAEEE
KCPTYLSKTVKFGTKSHPTACVFSPDGQYLVTGSADGFIEVWNYQTGKIR
KDLKYQAEDNFMMMDDAILTLSFSRDSEMLVSGSQDGKIKVWKIQTGQCL
RRLENAHSKGVTYAVFSKDSSQILSTSYDYLIKIHGLKSGKTLKEFRGHT
SFVNHATFSSDNHQIISCSSDGTIKIWNIKSSECLHTFQGGIGGSAGGVR
CNSVHLQPRQPDHFILCNKSSTVFVMNMQGQVVRTFTSGKREGGDFVCCS
ISPNGEWVYCIGEDRVLYCFSTSSGKLERTMVVHEKEALGAVHHPHQNLV
ATFSEDGTMKLWKA
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_034528XLOC_034528Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00054809TCONS_00054809Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR020472G-protein_beta_WD-40_rep
IPR006594LisH
IPR006595CTLH_C
IPR001680WD40_repeat
IPR0110426-blade_b-propeller_TolB-like
IPR015943WD40/YVTN_repeat-like_dom
IPR019775WD40_repeat_CS
IPR017986WD40_repeat_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 14..34
NoneNo IPR availableGENE3D1.10.10.670coord: 291..324
e-value: 7.6E-13
score: 47.7
NoneNo IPR availableGENE3D2.80.10.50coord: 325..429
e-value: 1.6E-22
score: 79.2
NoneNo IPR availableCDDcd00200WD40coord: 215..513
e-value: 1.44758E-59
score: 199.098
IPR020472G-protein beta WD-40 repeatPRINTSPR00320GPROTEINBRPTcoord: 365..379
score: 37.29
coord: 280..294
score: 41.68
coord: 500..514
score: 30.43
IPR006594LIS1 homology motifSMARTSM00667Lishcoord: 7..39
e-value: 9.4E-6
score: 35.1
IPR006594LIS1 homology motifPROSITEPS50896LISHcoord: 7..39
score: 10.48
IPR006595CTLH, C-terminal LisH motifSMARTSM00668ctlhcoord: 41..93
e-value: 2.0E-5
score: 34.0
IPR006595CTLH, C-terminal LisH motifPROSITEPS50897CTLHcoord: 41..93
score: 10.111
IPR001680WD40 repeatSMARTSM00320WD40_4coord: 296..336
e-value: 0.0018
score: 27.5
coord: 339..378
e-value: 8.5E-11
score: 51.9
coord: 429..471
e-value: 1.4
score: 16.2
coord: 474..513
e-value: 0.04
score: 23.1
coord: 203..243
e-value: 3.9E-5
score: 33.1
coord: 254..293
e-value: 8.9E-5
score: 31.9
coord: 381..427
e-value: 83.0
score: 4.9
IPR001680WD40 repeatPFAMPF00400WD40coord: 268..293
e-value: 4.2E-4
score: 21.0
coord: 340..378
e-value: 1.9E-8
score: 34.7
coord: 217..243
e-value: 3.8E-5
score: 24.3
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 261..302
score: 14.485
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 223..252
score: 12.413
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 481..514
score: 9.907
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 346..387
score: 16.29
IPR011042Six-bladed beta-propeller, TolB-likeGENE3D2.120.10.30coord: 430..514
e-value: 7.5E-13
score: 47.7
IPR015943WD40/YVTN repeat-like-containing domainGENE3D2.130.10.10coord: 134..290
e-value: 5.9E-22
score: 77.4
IPR019775WD40 repeat, conserved sitePROSITEPS00678WD_REPEATS_1coord: 365..379
IPR017986WD40-repeat-containing domainPROSITEPS50294WD_REPEATS_REGIONcoord: 211..514
score: 38.098
IPR017986WD40-repeat-containing domainSUPERFAMILY50978WD40 repeat-likecoord: 209..513

Blast
[Close]
BLAST of TCONS_00054809-protein vs. Swiss-Prot (Human)
Match: SMU1 (WD40 repeat-containing protein SMU1 OS=Homo sapiens GN=SMU1 PE=1 SV=2)

HSP 1 Score: 840.106 bits (2169), Expect = 0.000e+0
Identity = 388/512 (75.78%), Postives = 452/512 (88.28%), Query Frame = 0 
Query:    3 SLEVESADVIRLVQQYLKENNLRRTLQTLQEETTITLNTVDSVESFVADINNGHWDIVLQAIQSLKLPDKTLIDLYEQIVVELIELRELGAARSLLRQTDPMLMLKKHSADRYLRLENLLARSYFDPREAYPEGSSKEKRRNAIAQALAGEVNVVPPSRLMALLGQALKWQQYQGLLPPGTSIDLFRGKAAMKGAEEEKCPTYLSKTVKFGTKSHPTACVFSPDGQYLVTGSADGFIEVWNYQTGKIRKDLKYQAEDNFMMMDDAILTLSFSRDSEMLVSGSQDGKIKVWKIQTGQCLRRLENAHSKGVTYAVFSKDSSQILSTSYDYLIKIHGLKSGKTLKEFRGHTSFVNHATFSSDNHQIISCSSDGTIKIWNIKSSECLHTFQGGIGGSAG-GVRCNSVHLQPRQPDHFILCNKSSTVFVMNMQGQVVRTFTSGKREGGDFVCCSISPNGEWVYCIGEDRVLYCFSTSSGKLERTMVVHEKEALGAVHHPHQNLVATFSEDGTMKLWK 513
            S+E+ES+DVIRL+ QYLKEN+L R L TLQEETT++LNTVDS+ESFVADIN+GHWD VLQAIQSLKLPDKTLIDLYEQ+V+ELIELRELGAARSLLRQTDPM+MLK+   +RY+ LENLLARSYFDPREAYP+GSSKEKRR AIAQALAGEV+VVPPSRLMALLGQALKWQQ+QGLLPPG +IDLFRGKAA+K  EEEK PT LS+ +KFG KSH     FSPDGQYLVTGS DGFIEVWN+ TGKIRKDLKYQA+DNFMMMDDA+L + FSRD+EML +G+QDGKIKVWKIQ+GQCLRR E AHSKGVT   FSKDSSQILS S+D  I+IHGLKSGKTLKEFRGH+SFVN ATF+ D H IIS SSDGT+KIWN+K++EC +TF+  +G +AG  +  NSV L P+ P+HF++CN+S+TV +MNMQGQ+VR+F+SGKREGGDFVCC++SP GEW+YC+GED VLYCFST +GKLERT+ VHEK+ +G  HHPHQNL+AT+SEDG +KLWK
Sbjct:    2 SIEIESSDVIRLIMQYLKENSLHRALATLQEETTVSLNTVDSIESFVADINSGHWDTVLQAIQSLKLPDKTLIDLYEQVVLELIELRELGAARSLLRQTDPMIMLKQTQPERYIHLENLLARSYFDPREAYPDGSSKEKRRAAIAQALAGEVSVVPPSRLMALLGQALKWQQHQGLLPPGMTIDLFRGKAAVKDVEEEKFPTQLSRHIKFGQKSHVECARFSPDGQYLVTGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMMMDDAVLCMCFSRDTEMLATGAQDGKIKVWKIQSGQCLRRFERAHSKGVTCLSFSKDSSQILSASFDQTIRIHGLKSGKTLKEFRGHSSFVNEATFTQDGHYIISASSDGTVKIWNMKTTECSNTFKS-LGSTAGTDITVNSVILLPKNPEHFVVCNRSNTVVIMNMQGQIVRSFSSGKREGGDFVCCALSPRGEWIYCVGEDFVLYCFSTVTGKLERTLTVHEKDVIGIAHHPHQNLIATYSEDGLLKLWK 512
The following BLAST results are available for this feature:
BLAST of TCONS_00054809-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SMU10.000e+075.78WD40 repeat-containing protein SMU1 OS=Homo sapien... [more]
back to top