TCONS_00054828-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00054828-protein
Unique NameTCONS_00054828-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length438

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00054828-protein ID=TCONS_00054828-protein|Name=TCONS_00054828-protein|organism=Clytia hemisphaerica|type=polypeptide|length=438bp
MGIDALERFTKLSEKLKSPTGREEFSREDIKCINEALQNITTHEDDLKLA
YELLRCLRNSCVHSCKNQNLIVNADVLSTFGSFVEILMSPETSRAVKNKD
LYQKLTSVSIQFIGNLVVQNKRSQDAVWKTAFPKLFFSMMSNLGVKEKDI
LCMVVYNCVRSRTEIYNTSDEYWFMISILEYCTEYEDAEWGLLIMEWIIS
SPSFMKFYKELQDYPALRCSLLEFASVQLSTDNSTFSGIEEEFMLYLCDE
FSTKSTCILRLASALSPELEEEAGLLLKVLRLLSITTSCFDKYQKVRHHQ
NLLNSAITVLKQKQIANEGKKNEKSKEQLPKEHPIVAFEKDLVRVISNMA
YRNLNIQNQIRNAGGIEVLLNACNIDDSNPFIMQWAIFGIKNVCYENQAN
QQYIETLQQQGLASNEFLKDNKIDCRLENGKIKMTSLQ
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_034538XLOC_034538Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00054828TCONS_00054828Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011989ARM-like
IPR019156Ataxin-10_domain
IPR016024ARM-type_fold
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005488 binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011989Armadillo-like helicalGENE3D1.25.10.10coord: 21..329
e-value: 8.3E-5
score: 21.5
IPR011989Armadillo-like helicalGENE3D1.25.10.10coord: 340..414
e-value: 1.3E-6
score: 27.4
IPR019156Ataxin-10 domainPFAMPF09759Atx10homo_assoccoord: 340..434
e-value: 1.2E-30
score: 105.4
IPR016024Armadillo-type foldSUPERFAMILY48371ARM repeatcoord: 25..189
coord: 275..404

Blast
[Close]
BLAST of TCONS_00054828-protein vs. Swiss-Prot (Human)
Match: ATX10 (Ataxin-10 OS=Homo sapiens GN=ATXN10 PE=1 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 3.239e-37
Identity = 105/386 (27.20%), Postives = 191/386 (49.48%), Query Frame = 0 
Query:   47 LKLAYELLRCLRNSCVHSCKNQNLIVNADVLSTFGSFVEILMSPETSRAVKNKDLYQKLTSVSIQFIGNLVVQNKRSQDAVWKTAFPKLFFSMMSNLGVKEKDILCMVVYNCVRSRTEIYNTSDEYWFMISILEYCTEYEDAEWGLLIM-EWIISSPSFMKFYKELQDYPAL----RCSLLEFASVQLSTDNSTFSGIEEEFMLY---LCDEFSTKSTCILRLASALSPELEEEAGLLLKVLRLLSITTSCFDKYQKVRHHQNLLNSAITVLKQKQIANEGKKNEKSKEQLPKEHPIVA-----FEKDLVRVISNMAYRNLNIQNQIRNAGGIEVLLNACNIDDSNPFIMQWAIFGIKNVCYENQANQQYIETLQQQGLASNEFLK 419
            L+L  E  RCLRN+C+    NQN I N D   T G  V++++     R V+ + L        +QF+GN+  +N+ SQ  VW  AFP+LF S +++   K      M+++  + +   +    +     I +++   ++ ++EW  LI+ +  + SP  ++       +P L    R +LL+    ++++D          F+ +   +   F  +   +L+LAS   P+ +EEA   +++L +L   T   +    ++    LL   I +L+   +A +   N  S     +    ++     F+  L+R+I N+ Y+N + Q+++    GI ++L+ CNI DSNPF+ QW I+ I+N+  +N  NQ  I  +++QGLA    LK
Sbjct:   78 LQLITECFRCLRNACIECSVNQNSIRNLD---TIGVAVDLILLFRELR-VEQESLLTAF-RCGLQFLGNIASRNEDSQSIVWVHAFPELFLSCLNHPDKKIVAYSSMILFTSL-NHERMKELEENLNIAIDVIDAYQKHPESEWPFLIITDLFLKSPELVQAM-----FPKLNNQERVTLLDLMIAKITSDEPLTKDDIPVFLRHAELIASTFVDQCKTVLKLASEEPPD-DEEALATIRLLDVLCEMTVNTELLGYLQVFPGLLERVIDLLRVIHVAGKETTNIFSNCGCVRAEGDISNVANGFKSHLIRLIGNLCYKNKDNQDKVNELDGIPLILDNCNISDSNPFLTQWVIYAIRNLTEDNSQNQDLIAKMEEQGLADASLLK 451
The following BLAST results are available for this feature:
BLAST of TCONS_00054828-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ATX103.239e-3727.20Ataxin-10 OS=Homo sapiens GN=ATXN10 PE=1 SV=1[more]
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