TCONS_00054878-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00054878-protein
Unique NameTCONS_00054878-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length472

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00054878-protein ID=TCONS_00054878-protein|Name=TCONS_00054878-protein|organism=Clytia hemisphaerica|type=polypeptide|length=472bp
TRLSSNRARQARNDLKNAISLTKSEWISRICNDLNISVAREKGTKTFWDC
IKSIKRGLHRPIPSSPVMMCKADGTKCRSSEENAEVFRNHFQTLYNRPSV
FDSNILDSLDQCPIDDSLGFVSSTDEVYNAINHLKNNAPGETGITAQMLK
SIAQDSVCFDYLYQIIIVIWTNEECPAQLDIGRLVILPKKGDLSKPGNYR
GIMLLEIAYKIVAIVINKRLQPLIEQLDHENQCGFRRGRGCADAVFTVKM
AIKKRREHNLETWILFLDLVKAFDRVPRPLLWCILSKFGVAKKLIDVLKL
LHKNFQVTFDVESVAHTMPCTIGVKQGDVLGPALFIIFIAAVMITWRKIH
DRPLCIFRTKNDYNLTGRRYNSKGTDFDVDDSEYADDTAVLFESRRDIEC
YSPLLVEHFDRFGMEIHVGDYNTPDKPSKTEILFVSRPLKTTLTPNLSTI
PTLRTSTLEIKNSSQSPTNSAI
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_034576XLOC_034576Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00054878TCONS_00054878Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000477RT_dom
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000477Reverse transcriptase domainPFAMPF00078RVT_1coord: 188..417
e-value: 1.1E-35
score: 123.1
IPR000477Reverse transcriptase domainPROSITEPS50878RT_POLcoord: 168..439
score: 13.467
NoneNo IPR availableGENE3D3.30.70.270coord: 226..444
e-value: 1.0E-16
score: 60.6
NoneNo IPR availableCDDcd01650RT_nLTR_likecoord: 182..457
e-value: 1.28674E-45
score: 158.608
NoneNo IPR availableSUPERFAMILY56672DNA/RNA polymerasescoord: 183..421

Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00054878-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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