TCONS_00054967-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00054967-protein
Unique NameTCONS_00054967-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length109

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00054967-protein ID=TCONS_00054967-protein|Name=TCONS_00054967-protein|organism=Clytia hemisphaerica|type=polypeptide|length=109bp
MLLFCPTCANVLVVEEGSGGMSSFRFACKTCPFIYNITKKISDKKYPKLK
EVDDVLGGEEAWKNVDATQEKCPKCEHMMAYFMQIQTRSADEPMTTFYKC
CSCGHRWKE
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_034636XLOC_034636Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00054967TCONS_00054967Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001222Znf_TFIIS
IPR001529DNA-dir_RNA_pol_M/15kDasu
IPR012164Rpa12/Rpb9/Rpc10/TFS
IPR034014Zn_ribbon_RPC11_C
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0008270zinc ion binding
Vocabulary: Biological Process
TermDefinition
GO:0006351transcription, DNA-templated
GO:0006379mRNA cleavage
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006379 mRNA cleavage
biological_process GO:0006351 transcription, DNA-templated
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001222Zinc finger, TFIIS-typeSMARTSM00440Cys4_2coord: 70..109
e-value: 7.2E-23
score: 92.0
IPR001222Zinc finger, TFIIS-typePFAMPF01096TFIIS_Ccoord: 71..108
e-value: 1.1E-21
score: 76.3
IPR001222Zinc finger, TFIIS-typePROSITEPS00466ZF_TFIIS_1coord: 72..107
IPR001222Zinc finger, TFIIS-typePROSITEPS51133ZF_TFIIS_2coord: 68..108
score: 16.406
IPR001529DNA-directed RNA polymerase, M/15kDa subunitSMARTSM00661rpol9cneucoord: 3..56
e-value: 7.1E-9
score: 45.5
IPR001529DNA-directed RNA polymerase, M/15kDa subunitPFAMPF02150RNA_POL_M_15KDcoord: 4..38
e-value: 4.5E-6
score: 26.3
IPR012164DNA-directed RNA polymerase subunit/transcription factor SPIRSFPIRSF005586RNApol_RpoMcoord: 2..109
e-value: 1.7E-30
score: 103.8
NoneNo IPR availableGENE3D2.20.25.10coord: 1..44
e-value: 2.4E-7
score: 30.1
NoneNo IPR availableGENE3D2.20.25.10coord: 46..109
e-value: 2.4E-26
score: 90.8
NoneNo IPR availableSUPERFAMILY57783Zinc beta-ribboncoord: 48..109
IPR034014Pol III subunit C11, C-terminal zinc ribbonCDDcd10509Zn-ribbon_RPC11coord: 64..109
e-value: 4.95905E-29
score: 99.5822

Blast
[Close]
BLAST of TCONS_00054967-protein vs. Swiss-Prot (Human)
Match: RPC10 (DNA-directed RNA polymerase III subunit RPC10 OS=Homo sapiens GN=POLR3K PE=1 SV=2)

HSP 1 Score: 168.318 bits (425), Expect = 9.008e-56
Identity = 76/111 (68.47%), Postives = 92/111 (82.88%), Query Frame = 0 
Query:    1 MLLFCPTCANVLVVEEGSGGMSSFRFACKTCPFIYNITKKISDKKYPKLKEVDDVLGGEEAWKNVDATQEKCPKCEHMMAYFMQIQTRSADEPMTTFYKCCS--CGHRWKE 109
            MLLFCP C N L+VEEG       RF+C TCP+++NIT+K++++KYPKLKEVDDVLGG  AW+NVD+T E CPKCEH  AYFMQ+QTRSADEPMTTFYKCC+  CGHRW++
Sbjct:    1 MLLFCPGCGNGLIVEEGQ---RCHRFSCNTCPYVHNITRKVTNRKYPKLKEVDDVLGGAAAWENVDSTAESCPKCEHPRAYFMQLQTRSADEPMTTFYKCCNAQCGHRWRD 108
The following BLAST results are available for this feature:
BLAST of TCONS_00054967-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RPC109.008e-5668.47DNA-directed RNA polymerase III subunit RPC10 OS=H... [more]
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