TCONS_00055031-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00055031-protein
Unique Name	TCONS_00055031-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	412

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00055031-protein ID=TCONS_00055031-protein|Name=TCONS_00055031-protein|organism=Clytia hemisphaerica|type=polypeptide|length=412bp
MSFTTIPLASLMSLYSIPQVSPASSSRLLSKRDLYKSFFRTIPSDKNQIK
AMLKVFKRFDWNYIFAVGSDDDYGKLGVSDLKQEAGPLEICITKDEYIPY
QSDKTGEKVDSVIQKIAKEEKAKVVVLFLYVQGLGDLILQKAAAMKPPLE
RIWLTSESWNPSAAIHFSSNISRYYNQAVGILSISIKKYPMTELVDYMTE
QVIENWECNFWFRKYIQQNKPFECNIDSISLDKNTFICKPDTNGKVKNIS
VAAVLTDIKKLPGNIDRLIDATTALGHAIHKVVRTQCNNSPCYIDTENLE
TASITKQMFKTNFTNEQGEIISFTKDGNPLNAYYTIENLIFNNETGAFEY
VPVGHWALYNNSRTELKLNESAIVWPQWFNNSRQKTDGSGDWVETDIPAX
SVMALCTLSNQL

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_034665	XLOC_034665	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00055031	TCONS_00055031	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000337	GPCR_3
IPR001828	ANF_lig-bd_rcpt
IPR028082	Peripla_BP_I

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral component of membrane

Vocabulary: **Biological Process**
Term	Definition
GO:0007186	G-protein coupled receptor signaling pathway

Vocabulary: **Molecular Function**
Term	Definition
GO:0004930	G-protein coupled receptor activity

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007186	G-protein coupled receptor signaling pathway
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0004930	G-protein coupled receptor activity

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000337	GPCR, family 3	PRINTS	PR00248	GPCRMGR	coord: 29..48 score: 49.22 coord: 64..81 score: 33.33 coord: 48..64 score: 36.95
IPR001828	Receptor, ligand binding region	PFAM	PF01094	ANF_receptor	coord: 3..340 e-value: 5.9E-44 score: 150.5
None	No IPR available	GENE3D	3.40.50.2300		coord: 1..331 e-value: 6.9E-35 score: 120.0
IPR028082	Periplasmic binding protein-like I	SUPERFAMILY	53822	Periplasmic binding protein-like I	coord: 2..376

Blast

[Close]

BLAST of TCONS_00055031-protein vs. Swiss-Prot (Human)
Match: CASR (Extracellular calcium-sensing receptor OS=Homo sapiens GN=CASR PE=1 SV=3)

HSP 1 Score: 147.517 bits (371), Expect = 2.184e-38
Identity = 111/390 (28.46%), Postives = 189/390 (48.46%), Query Frame = 0

Query:    8 LASLMSLYSIPQVSPASSSRLLSKRDLYKSFFRTIPSDKNQIKAMLKVFKRFDWNYIFAVGSDDDYGKLGVSDLKQEAGPLEICITKDEYIPYQSDKTGEKVDSVIQKIAKEEKAKVVVLFLYVQGLGDLILQKAAAMKPPLERIWLTSESWNPSAAIHFSSNISRYYNQAVGILSISIKKYPMTELVDYM-----TEQVIENWECNFW---FRKYIQQNKPFECNIDSI---------SLDKNTFICKPDTNGKVKNISVAAVLTDIKKLPGNIDRLIDATTALGHAIHKVV-----RTQCNNSPCYIDTENLETASITKQMFKTNFTNEQGEIISFTKDGNPLNAYYTIENLIFNNETGAFEYVPVGHWALYNNSRTELKLNESAIVW 375
            +A+L+ L+ IPQVS ASSSRLLS ++ +KSF RTIP+D++Q  AM  + + F WN++  + +DDDYG+ G+   ++EA   +ICI   E I   SD+  E++  V++ I +   AKV+V+F     L  LI  K    +    +IWL SE+W  S+ I     + +Y++   G +  ++K   +    +++      + V   +   FW   F  ++Q+       +D+              ++   +P   G     SV     D   L  + +  + A  ++ HA+  +      R    N  C  D + +E   + K +   NFTN  GE ++F + G+ L   Y+I N   + E G+  +  VG++ +Y      L +NE  I+W
Sbjct:  153 VANLLGLFYIPQVSYASSSRLLSNKNQFKSFLRTIPNDEHQATAMADIIEYFRWNWVGTIAADDDYGRPGIEKFREEAEERDICIDFSELISQYSDE--EEIQHVVEVI-QNSTAKVIVVFSSGPDLEPLI--KEIVRRNITGKIWLASEAWASSSLI----AMPQYFHVVGGTIGFALKAGQIPGFREFLKKVHPRKSVHNGFAKEFWEETFNCHLQEGAKGPLPVDTFLRGHEESGDRFSNSSTAFRPLCTGDENISSVETPYIDYTHLRISYNVYL-AVYSIAHALQDIYTCLPGRGLFTNGSC-ADIKKVEAWQVLKHLRHLNFTNNMGEQVTFDECGD-LVGNYSIINWHLSPEDGSIVFKEVGYYNVYAKKGERLFINEEKILW 530

The following BLAST results are available for this feature:

BLAST of TCONS_00055031-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00055031-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
CASR	2.184e-38	28.46	Extracellular calcium-sensing receptor OS=Homo sap...	[more]

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TCONS_00055031-protein (polypeptide) - C. hemisphaerica