TCONS_00056267-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00056267-protein
Unique NameTCONS_00056267-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length509

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00056267-protein ID=TCONS_00056267-protein|Name=TCONS_00056267-protein|organism=Clytia hemisphaerica|type=polypeptide|length=509bp
MSSYEELEVAQRNALSAIQTHLGQGLDPLTEEYRGINNRPHLKEESNPKN
AEHSAIIKLVQTLEVDIETLSIEKRQYVNTLKDVNEQLEQYVRRGRDTQE
ETDEIPTLQAIESLKRRGIEQGKAISEESKRIYIGLKEVEEELSSGDYLH
SIELRGEIEKLLETLQKSECILGQFVYKISKTRDNLEERILLESSDPVTH
MGGLFFSKTPLPVDCSTPLFRRTRLESKGKEDQKAQVEEPKRMDSVLDSV
SVAALLANKVDISSLPKFGENPSDDVVEFITKLDISLSFYQLDDKQKARV
VPLLLMKRAYTFYFTLPSIVKDNYKELTKSLRKEFDAPELKYRKRQELHG
IKQNGDTITRYLERVERLSQNLQVADQTKLDIMIAGLDIPYRNYIQMKQP
RTYSDATHALLLKESVNPPIDDTATMNSILAAVEAMRPSANNRNSERPPM
VCYYCNRRGNMMRECQLRKRDQSRNNRPPTKGPSQEKCTQCYRWGHIAKE
CRNRKKVVD
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_035441XLOC_035441Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00056267TCONS_00056267Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001878Znf_CCHC
IPR005162Retrotrans_gag_dom
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 358..378
NoneNo IPR availableCOILSCoilCoilcoord: 67..101
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 467..487
IPR001878Zinc finger, CCHC-typeSMARTSM00343c2hcfinal6coord: 487..503
e-value: 0.2
score: 15.5
coord: 451..467
e-value: 0.6
score: 12.6
IPR001878Zinc finger, CCHC-typeGENE3D4.10.60.10coord: 473..507
e-value: 0.0032
score: 17.2
coord: 396..472
e-value: 2.8E-4
score: 20.6
IPR001878Zinc finger, CCHC-typeSUPERFAMILY57756Retrovirus zinc finger-like domainscoord: 441..505
IPR005162Retrotransposon gag domainPFAMPF03732Retrotrans_gagcoord: 319..388
e-value: 3.3E-9
score: 36.8

Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00056267-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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