TCONS_00056333-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00056333-protein
Unique Name	TCONS_00056333-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	512

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00056333-protein ID=TCONS_00056333-protein|Name=TCONS_00056333-protein|organism=Clytia hemisphaerica|type=polypeptide|length=512bp
MAFQELFGAGIFVTTIVAGSINFSTTFMMARRPFLRDNIFYLVAVIWTFV
VIYRREIKTIEATGFIALYVLYVSIVIIGQIVNRFLRRRTLSQSRERLMT
VASTDDENSGVNHSVNQGLDQQQVDIPSPMDVGGDNDERPLINEDDELVP
RMEGADESQPISPISITESPQPKRPRHPKHRLIRDMSLSADFSSYNYSSD
VAHLFKENRYKDDKNIFSDLVYTNNDSVTMKDFVRPMNIVERLTGIRKVN
WQNQSKLSKAFSIIQVPIIFMLSITCPVVDRDVQGQKWDKWLSIWHCFAS
PIFVVFALQVGTVSVYNDFLVYHLVLVIGSILGCLLYFISSSDYTPKFHV
IFALFGFAVAVVWIKCTAQEVVNLLQTFGWISHLSYGIMGLTLLAWGNSI
GDFISNLTMARNGAPRMAIAACYGGPLLNMLLGVGISCTISAIRDGGEKS
IIRGSTQYILSAMVLAISLLSAIIILPLHKFMSSKYIGFYLFGLYALYLT
LSVLHEADILNL

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_035486	XLOC_035486	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00056333	TCONS_00056333	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR004837	NaCa_Exmemb

Vocabulary: **Biological Process**
Term	Definition
GO:0055085	transmembrane transport

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral component of membrane

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0055085	transmembrane transport
cellular_component	GO:0016021	integral component of membrane

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	1.20.1250.20		coord: 2..504 e-value: 8.3E-4 score: 18.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 101..179
IPR004837	Sodium/calcium exchanger membrane region	PFAM	PF01699	Na_Ca_ex	coord: 353..503 e-value: 4.5E-24 score: 85.0

Blast

[Close]

BLAST of TCONS_00056333-protein vs. Swiss-Prot (Human)
Match: NCLX (Mitochondrial sodium/calcium exchanger protein OS=Homo sapiens GN=SLC8B1 PE=1 SV=2)

HSP 1 Score: 187.963 bits (476), Expect = 9.533e-53
Identity = 110/306 (35.95%), Postives = 170/306 (55.56%), Query Frame = 0

Query:  219 DLVYTNNDSVTMKDFVRPMNIVERLTG---IRKVN------WQNQSKLSKAFSIIQVPIIFMLSITCPVVDRDVQGQKWDKWLSIWHCFASPIFVVFALQVGTVSVYND---FLVYHLVLVIGSILGCLLYFISSSDYTPKFHVIFALFGFAVAVVWIKCTAQEVVNLLQTFGWISHLSYGIMGLTLLAWGNSIGDFISNLTMARNGAPRMAIAACYGGPLLNMLLGVGISCTISAIRDGGEKSIIRGSTQYILSAMVLAISLLSAIIILPLHKFMSSKYIGFYLFGLYALYLTLSVLHEADILNL 512
            D V +N +S    D  RP+   +  T    +R +N      W+ +S   KA  + ++P+ F+L +T PVVD D   Q W + L+  H   SP+ VV  LQ GT  VY       V+ +V++ G+ L  + +F +S    P+ H +FA  GF  + +WI   A EVVN+L++ G +  LS  ++GLTLLAWGNSIGD  S+ T+AR G PRMA +AC+GG + N+L+GVG+ C +   R   E  +        + A  L +SL+ +++ +PL  F  S+  GF L   Y  +L +++L E  +++L
Sbjct:  276 DRVSSNTNSYDYGDEYRPLFFYQETTAQILVRALNPLDYMKWRRKSAYWKALKVFKLPVEFLLLLTVPVVDPDKDDQNWKRPLNCLHLVISPLVVVLTLQSGTYGVYEIGGLVPVWVVVVIAGTALASVTFFATSDSQPPRLHWLFAFLGFLTSALWINAAATEVVNILRSLGVVFRLSNTVLGLTLLAWGNSIGDAFSDFTLARQGYPRMAFSACFGGIIFNILVGVGLGCLLQISRSHTEVKLEPDGLLVWVLAGALGLSLVFSLVSVPLQCFQLSRVYGFCLLLFYLNFLVVALLTEFGVIHL 581

HSP 2 Score: 81.6481 bits (200), Expect = 2.595e-16
Identity = 43/108 (39.81%), Postives = 62/108 (57.41%), Query Frame = 0

Query:    1 MAFQELFGAGIFVTTIVAGSINFSTTFMMARRPFLRDNIFYLVAVIWTFVVIYRREIKTIEATGFIALYVLYVSIVIIGQIVNRFLRRRTLSQSRERLMTVASTDDEN 108
            +A   LFGAG+ VTT+VAG I     FM A RPF RD +FY+VAV  TF++++R  +    A G++ LYV YV  VI+   + +  RR +L         + S  +E+
Sbjct:  169 LALGALFGAGVLVTTVVAGGITILHPFMAASRPFFRDIVFYMVAVFLTFLMLFRGRVTLAWALGYLGLYVFYVVTVILCTWIYQRQRRGSLFCPMPVTPEILSDSEED 276

The following BLAST results are available for this feature:

BLAST of TCONS_00056333-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00056333-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
NCLX	9.533e-53	35.95	Mitochondrial sodium/calcium exchanger protein OS=...	[more]

You are here

TCONS_00056333-protein (polypeptide) - C. hemisphaerica