TCONS_00056347-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00056347-protein
Unique NameTCONS_00056347-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length475

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00056347-protein ID=TCONS_00056347-protein|Name=TCONS_00056347-protein|organism=Clytia hemisphaerica|type=polypeptide|length=475bp
MSIMSDEVNFLVYRYLQESGYQHSAFSFGIESHITQSNINNTVVPPGALV
NLLQKGIQFIEGELCVTDEGNLLENLDILGSIPLIDAVVPEALAERVQTI
YRLISQKVDAKKKLNQYAAELQDDDESILLHGHRREVFGCDWHPTENIVT
TGAADGVAGLWYLDSEEIKIIELNHAQDVNSKFTQSSDVTSLTWNPDGQT
LATASTIENAIRIWNMEGNLLATLCGHKDTVMTLKWNSKGNLLLSASLDK
KCILWNADTWQALREFQYHSGPVTDVDWQNEDIFASCSTDKLIFVCKMDS
DQPLHTLQSHTADINCIEWNKSGDVLASCGDDKLVKLWNTKGGFHDLAGH
TKEVTQLKWNRKKLLASASYDATIRIWNTEQCTCLQTLNKHEDPINSISF
HPDGDFLVSGALDGLLNVWNVQTGACIHTKRNTNGTGIFEVQWSPDASYI
CVCQTDSDVRILDAKKITASNNSSS
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_035500XLOC_035500Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00056347TCONS_00056347Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR020472G-protein_beta_WD-40_rep
IPR001680WD40_repeat
IPR006594LisH
IPR024977Apc4_WD40_dom
IPR015943WD40/YVTN_repeat-like_dom
IPR019775WD40_repeat_CS
IPR017986WD40_repeat_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR020472G-protein beta WD-40 repeatPRINTSPR00320GPROTEINBRPTcoord: 407..421
score: 34.53
coord: 365..379
score: 38.1
coord: 326..340
score: 33.12
IPR001680WD40 repeatSMARTSM00320WD40_4coord: 217..256
e-value: 6.2E-8
score: 42.4
coord: 340..378
e-value: 6.0E-7
score: 39.1
coord: 300..339
e-value: 7.6E-11
score: 52.0
coord: 423..463
e-value: 0.36
score: 19.8
coord: 259..297
e-value: 4.5E-4
score: 29.5
coord: 381..420
e-value: 1.6E-10
score: 51.0
coord: 123..162
e-value: 0.027
score: 23.6
coord: 176..215
e-value: 0.0061
score: 25.8
IPR001680WD40 repeatPFAMPF00400WD40coord: 345..378
e-value: 3.0E-4
score: 21.4
coord: 383..420
e-value: 9.4E-8
score: 32.5
coord: 302..339
e-value: 1.1E-8
score: 35.5
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 224..265
score: 12.814
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 130..171
score: 11.177
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 307..339
score: 13.416
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 388..429
score: 17.393
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 347..387
score: 13.683
IPR006594LIS1 homology motifSMARTSM00667Lishcoord: 4..36
e-value: 1.2E-5
score: 34.7
IPR006594LIS1 homology motifPFAMPF08513LisHcoord: 6..32
e-value: 1.4E-9
score: 37.5
IPR006594LIS1 homology motifPROSITEPS50896LISHcoord: 4..36
score: 10.391
IPR024977Anaphase-promoting complex subunit 4, WD40 domainPFAMPF12894ANAPC4_WD40coord: 212..280
e-value: 3.6E-5
score: 23.9
NoneNo IPR availableGENE3D2.40.50.140coord: 219..250
e-value: 5.9E-11
score: 41.3
coord: 352..375
e-value: 2.2E-10
score: 39.5
NoneNo IPR availableGENE3D2.80.10.50coord: 193..218
e-value: 1.3E-7
score: 31.2
NoneNo IPR availableGENE3D1.10.10.670coord: 376..423
e-value: 6.3E-24
score: 83.3
coord: 424..474
e-value: 7.9E-9
score: 34.8
coord: 251..274
e-value: 8.7E-9
score: 34.7
NoneNo IPR availableCDDcd00200WD40coord: 186..461
e-value: 6.10731E-69
score: 222.981
IPR015943WD40/YVTN repeat-like-containing domainGENE3D2.130.10.10coord: 275..351
e-value: 8.8E-24
score: 83.7
IPR015943WD40/YVTN repeat-like-containing domainGENE3D2.130.10.10coord: 120..192
e-value: 4.6E-11
score: 41.7
IPR019775WD40 repeat, conserved sitePROSITEPS00678WD_REPEATS_1coord: 243..257
IPR019775WD40 repeat, conserved sitePROSITEPS00678WD_REPEATS_1coord: 365..379
IPR019775WD40 repeat, conserved sitePROSITEPS00678WD_REPEATS_1coord: 326..340
IPR019775WD40 repeat, conserved sitePROSITEPS00678WD_REPEATS_1coord: 407..421
IPR017986WD40-repeat-containing domainPROSITEPS50294WD_REPEATS_REGIONcoord: 130..472
score: 51.201
IPR017986WD40-repeat-containing domainSUPERFAMILY50978WD40 repeat-likecoord: 186..461

Blast
[Close]
BLAST of TCONS_00056347-protein vs. Swiss-Prot (Human)
Match: TBL1R (F-box-like/WD repeat-containing protein TBL1XR1 OS=Homo sapiens GN=TBL1XR1 PE=1 SV=1)

HSP 1 Score: 404.445 bits (1038), Expect = 3.970e-137
Identity = 209/519 (40.27%), Postives = 309/519 (59.54%), Query Frame = 0 
Query:    1 MSIMSDEVNFLVYRYLQESGYQHSAFSFGIESHITQSNINNTVVPPGALVNLLQKGIQFIEGELCVTDEGNLLENLDILGSIPLIDAVVPEALAERVQTIYR------------------------------LISQKVDAKKKLNQYAAELQDD-------DESILLHGHRREVFGCDWHPTENIVTTGAADGVAGLWYLD----SEEIKIIELNHAQDVNSKFTQSSDVTSLTWNPDGQTLATASTIENAIRIWNMEGNLLATLCGHKDTVMTLKWNSKGNLLLSASLDKKCILWNADTWQALREFQYHSGPVTDVDWQNEDIFASCSTDKLIFVCKMDSDQPLHTLQSHTADINCIEWNKSGDVLASCGDDKLVKLWNTK--GGFHDLAGHTKEVTQLKW----------NRKKLLASASYDATIRIWNTEQCTCLQTLNKHEDPINSISFHPDGDFLVSGALDGLLNVWNVQTGACIHTKRNTNGTGIFEVQWSPDASYICVCQTDSDVRILDAKK 466
            MSI SDEVNFLVYRYLQESG+ HSAF+FGIESHI+QSNIN  +VPP AL++++QKG+Q++E E+ + ++G L +   I  S+ LIDAV+P+ +  R Q  YR                                 ++  A    N +   ++ D       +++++L GH  EVF C W+P  +++ +G+ D  A +W L     S   +++  +  ++       + DVTSL WN +G  LAT S  +   RIW  +GNL +TL  HK  +  LKWN KGN +LSA +DK  I+W+A T +A ++F +HS P  DVDWQ+ + FASCSTD  I VCK+  D+P+ T Q HT ++N I+W+ +G++LASC DD  +K+W+ K     HDL  H KE+  +KW          N   +LASAS+D+T+R+W+ ++  C+ TL KH++P+ S++F PDG +L SG+ D  +++WN QTGA +H+ R T   GIFEV W+     +    +D  V +LD +K
Sbjct:    1 MSISSDEVNFLVYRYLQESGFSHSAFTFGIESHISQSNINGALVPPAALISIIQKGLQYVEAEVSINEDGTLFDGRPIE-SLSLIDAVMPDVVQTR-QQAYRDKLAQQQAAAAAAAAAAASQQGSAKNGENTANGEENGAHTIANNHTDMMEVDGDVEIPPNKAVVLRGHESEVFICAWNPVSDLLASGSGDSTARIWNLSENSTSGSTQLVLRHCIREGGQDVPSNKDVTSLDWNSEGTLLATGS-YDGFARIWTKDGNLASTLGQHKGPIFALKWNKKGNFILSAGVDKTTIIWDAHTGEAKQQFPFHSAPALDVDWQSNNTFASCSTDMCIHVCKLGQDRPIKTFQGHTNEVNAIKWDPTGNLLASCSDDMTLKIWSMKQDNCVHDLQAHNKEIYTIKWSPTGPGTNNPNANLMLASASFDSTVRLWDVDRGICIHTLTKHQEPVYSVAFSPDGRYLASGSFDKCVHIWNTQTGALVHSYRGTG--GIFEVCWNAAGDKVGASASDGSVCVLDLRK 514
The following BLAST results are available for this feature:
BLAST of TCONS_00056347-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TBL1R3.970e-13740.27F-box-like/WD repeat-containing protein TBL1XR1 OS... [more]
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