TCONS_00056493-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00056493-protein
Unique NameTCONS_00056493-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length653

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00056493-protein ID=TCONS_00056493-protein|Name=TCONS_00056493-protein|organism=Clytia hemisphaerica|type=polypeptide|length=653bp
SNLHFPKKKRKNTMGKTSKKKNKQQKKTNKTKKSTDATNSSQQDVEKLEF
ALMSDLESGTLEESRMSDLLQVIAEKSYEEDITCALATISGFVLLNKGVQ
LFVAKQGIQRICGLLLHNSLDIREKTIGTFQNALLTGGDEFAECVTKQGV
MKALMDAFKIAQTNGIIKQAGDDLQLTKEKEILTEYIAFFQHTCELSPEA
LQLIQLGPTVTFLLSIIQNISSNNTADQELRLSAAQCLYTISEDNVDFIS
LVQAQPTLFASLPALANSNLTDENAVLLSALISGTLYNISSVLPEAADNL
EVMILSNISRCFDVVIPDDIFTIDEKTQVTLNVVRLKSQIVAMELLSNIL
SLKDENASWNDTTDDENEEEEMKNGSHHHGDESIQRELIDVELLNKLKEL
NMPEKIIRRCQINESSVNSKLQSCLLTLQNRSWHCLSNLVSSTSLEYIGG
MENVTNLWNTCKKALLTDNSELRYIEGPYNDAVVAGLRSILEKLLPNIPS
DEILMETVEIIRILLSVNLTTSSSSDSSEESLSTKLNIISCLGMIGNCLS
GRDNGFELLKEVAVIFNNLLTKTENLNLIVMAEVLDATFDSFGDGPHADS
TLQQSSLLDTLKKCSPTLRDRLKKERRELGENYGIINMARENLVNFLKYK
QEG
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_035589XLOC_035589Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00056493TCONS_00056493Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011989ARM-like
IPR016024ARM-type_fold
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005488 binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011989Armadillo-like helicalGENE3D1.25.10.10coord: 6..626
e-value: 8.2E-10
score: 37.1
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..43
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 357..381
IPR016024Armadillo-type foldSUPERFAMILY48371ARM repeatcoord: 500..614
coord: 67..272
coord: 428..468

Blast
[Close]
BLAST of TCONS_00056493-protein vs. Swiss-Prot (Human)
Match: HEAT3 (HEAT repeat-containing protein 3 OS=Homo sapiens GN=HEATR3 PE=1 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 1.989e-18
Identity = 78/334 (23.35%), Postives = 150/334 (44.91%), Query Frame = 0 
Query:  333 VVRLKSQIVAMELLSNILSLKDE-NASWNDTTDDENEEEEMKNGSHHHGDESIQRELIDVELLNKLKELNMPEKIIRRCQINES------SVNSKLQSCLL---TLQNRSWHCLSNLVSSTSLEYIGGMENVTNLWNTCKKALLTDNSELRYIEGPYNDAVVAGLRSILEKLLPNIPSDEILMETVEIIRILLSVNLTTSSSSDSSEESLSTKLNIISCLGMIGNCLSGRDNGFELLKEVAVIFNNLLTKTENLNLIVMAEVLDATFDSFGDGPHADSTLQQSSLLDTLKKCSPTLRDRLKKERRELGENYG-----IINMARENLVNFLKYKQ 651
            +  L +Q  A+E++ N+   +D  +  W + +  +  +  M+N     G +      +  E+   L    +P+KI  +     S      S N   +  +    T+Q R+  CL +LVS   +E++GG   +  L     + L +     ++++  + +A+ + LR++L+            M +  I + +    L T   +     ++  ++N++S LG+ G+ L+  D   E LK +      + TK  + +L+V  E LDA FD F DG  A+    Q  LL  LK+  P  + +++KE R    NY      +++  + NL  F+ Y++
Sbjct:  357 IALLTAQQTALEIIVNMCCNEDPSDDEWEELSSSDESDAFMENSFSECGGQLFSPLCLSHEVHTALTNYLIPKKIFEKTAFPNSIAVDLCSRNPTWKPLIRKMNTIQCRALFCLQSLVSLLDVEHLGGAAALQTLAQHLSQLLFSQPDFAKHVD--FLEAISSALRALLQT-----------MASKNISQCMTPDQLMTLCKAGIHSSNVGVRVNVVSILGITGSVLAKEDGTLETLKNIGCFLLEVTTK--DPSLVVAGEALDALFDVFADGKEAERASIQIKLLSALKEFQPVFKMKIRKEGR---GNYSTDQLCVLDNVKMNLRRFIAYQE 672
The following BLAST results are available for this feature:
BLAST of TCONS_00056493-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
HEAT31.989e-1823.35HEAT repeat-containing protein 3 OS=Homo sapiens G... [more]
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