TCONS_00056507-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00056507-protein
Unique Name	TCONS_00056507-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	613

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00056507-protein ID=TCONS_00056507-protein|Name=TCONS_00056507-protein|organism=Clytia hemisphaerica|type=polypeptide|length=613bp
MFDLLADEEENSLDANQSKNDEPQEQQSQSQEQEVTTKKKNKKRKNKKKN
KSPSKDDTNIDDSELDEIDRANLMLGVTPRTDMDSTDGSGKQPFRNKSLL
SVDARNLNPANEMKRRFGASVVDQDRRRNPHERRFKRLTRLVVPKDNWPP
YSKQGITMCEDRSDETMSSLFTFEHQETYQKIQFKFYDAVESMDHNNIIA
LLNMYPYHIDSMLQLSEVCRHNEDVQMASELVERALYVFECNFHTLFNIA
LGTCRLNYKRAESRPFFLALFRHIKYVGDRACYRTALEFCKLLLGLDPEE
DPLCTLLMIDYYAIKAEEYAYFIQLFDEYETLRNISMLPNFLYSFALAKF
YQGKTEEANKAIRKALIRFPSLFVELMDKCGVSVDDTLRHFPLFDPVSYI
QQSKPLNALCALYIGRSHVLWKAPEVIDWIVSAAKRIMDENDQHAGDIKQ
AKIMRETKYNRIPNNVLRHILISEIKEALTNLSATIRNQTIMTHDPLPPE
DSVTGYSRPDRPQGSQDQRNLLSLFFQSIMPSFDQAENERLARGQQDEAR
AIPNEAGEGNVLRDGAEGLMNAMRELLHTMTFRNDGQEGDGQANQDNDGE
VEQQWEEDDQDWN

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_035594	XLOC_035594	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00056507	TCONS_00056507	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR011990	TPR-like_helical_dom
IPR006994	TCF25

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011990	Tetratricopeptide-like helical domain	GENE3D	1.25.40.10		coord: 174..552 e-value: 9.6E-10 score: 37.4
IPR011990	Tetratricopeptide-like helical domain	SUPERFAMILY	48452	TPR-like	coord: 204..298 coord: 337..371
IPR006994	Transcription factor 25	PFAM	PF04910	Tcf25	coord: 171..499 e-value: 6.0E-104 score: 347.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..101
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 536..562
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 490..516
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 581..613

Blast

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BLAST of TCONS_00056507-protein vs. Swiss-Prot (Human)
Match: TCF25 (Transcription factor 25 OS=Homo sapiens GN=TCF25 PE=1 SV=1)

HSP 1 Score: 401.364 bits (1030), Expect = 7.515e-132
Identity = 211/539 (39.15%), Postives = 309/539 (57.33%), Query Frame = 0

Query:   82 DMDSTDGSGKQPFRN-KSLLSVDARNLNPANEMKRRFGASVVDQDRRRNPHERRFKRLTRLVVPKDNWPPYSKQGITMCEDRSDETMSSLFTFEHQETYQKIQFKFYDAVESMDHNNIIALLNMYPYHIDSMLQLSEVCRHNEDVQMASELVERALYVFECNFHTLFNIALGTCRLNYKRAESRPFFLALFRHIKYVGDRACYRTALEFCKLLLGLDPEEDPLCTLLMIDYYAIKAEEYAYFIQLFDEYETLRNISMLPNFLYSFALAKFY------------QGKTEEANKAIRKALIRFPSLFVELMDKCGVSVDDTLRHFPLFDPVSYIQQSKPLNALCALYIGRSHVLWKAPEVIDWIVSAAKRIMDENDQHAGDIKQAKIMRETKYNRIPNNVLRHILISEIKEALTNLSATIRNQTIMTHDPLPPEDSVTGYSRPDRPQGSQDQRNLLSLFFQSIMPSFDQAENERLARGQQDEARAIPNEAGEGNVLRD-GAEGLMNAMRELLHTMTFRNDGQEGDGQANQDNDGEVEQQWE 606
            D    +  G  P  + K +L V+ R+LNP  E+KR FGA  +  ++R    +R + + T L  PK  WP YSK G++M    S + +S  F FEH E YQ+ Q KF  AVESM+ NNI+ LL   PYH+DS+LQLS+ CR  ED +MA +LVERALY  EC FH LF++  G CRL+Y+R E+R F+LAL++ + ++  R C RTALE+CKL+L L+P+EDPLC LL+ID+ A++A  Y Y I+LF E+E  RN+S LPNF +S  LA F                 ++A+  I++AL  FP + + L++ C V  D ++     F P + I Q   L+ L  LY+GRSH LWK P  + W+      ++   D     ++  +  R+  Y R P N+ RH+++SEIKEA+  L   +  Q++M  DPLPP D++  Y RP+R        N ++LFF+S++P++   E ER            P E   G + R+ G   LM A+R+++            D +A  ++D E E +W+
Sbjct:  159 DSTGLNRPGPAPLSSRKHVLYVEHRHLNPDTELKRYFGARAILGEQRPRQRQRVYPKCTWLTTPKSTWPRYSKPGLSMRLLESKKGLS-FFAFEHSEEYQQAQHKFLVAVESMEPNNIVVLLQTSPYHVDSLLQLSDACRFQEDQEMARDLVERALYSMECAFHPLFSLTSGACRLDYRRPENRSFYLALYKQMSFLEKRGCPRTALEYCKLILSLEPDEDPLCMLLLIDHLALRARNYEYLIRLFQEWEAHRNLSQLPNFAFSVPLAYFLLSQQTDLPECEQSSARQKASLLIQQALTMFPGVLLPLLESCSVRPDASVSSHRFFGPNAEISQPPALSQLVNLYLGRSHFLWKEPATMSWLEENVHEVLQAVDAGDPAVEACENRRKVLYQRAPRNIHRHVILSEIKEAVAALPPDVTTQSVMGFDPLPPSDTIYSYVRPER-LSPISHGNTIALFFRSLLPNYTM-EGER------------PEEGVAGGLNRNQGLNRLMLAVRDMMANFHL------NDLEAPHEDDAEGEGEWD 676

The following BLAST results are available for this feature:

BLAST of TCONS_00056507-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00056507-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
TCF25	7.515e-132	39.15	Transcription factor 25 OS=Homo sapiens GN=TCF25 P...	[more]

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TCONS_00056507-protein (polypeptide) - C. hemisphaerica