TCONS_00056511-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00056511-protein
Unique NameTCONS_00056511-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length198

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00056511-protein ID=TCONS_00056511-protein|Name=TCONS_00056511-protein|organism=Clytia hemisphaerica|type=polypeptide|length=198bp
MHGRLKVKTTAQQQEEKRKEREKKVKIFTGAMKQIFTQRGNDELMDSTLQ
LTQQILASNPDVYTLWNIRKEIFVKKLEVVEDIDKLLLEELDFLQNCLQV
NPKSYGVWNHRMFTMLKMKTPNWPRELKLCNLFLQYDERNFHCWDYRRFV
VRESKVPAEEELNYTTEKIKENFSNYSSWHNRSKLLXQRKLFQLFVMA
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_035596XLOC_035596Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00056511TCONS_00056511Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002088Prenyl_trans_a
Vocabulary: Molecular Function
TermDefinition
GO:0008318protein prenyltransferase activity
Vocabulary: Biological Process
TermDefinition
GO:0018342protein prenylation
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0018342 protein prenylation
molecular_function GO:0008318 protein prenyltransferase activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002088Protein prenyltransferase, alpha subunitPFAMPF01239PPTAcoord: 90..114
e-value: 2.4E-8
score: 33.4
coord: 126..152
e-value: 2.4E-7
score: 30.1
coord: 161..187
e-value: 6.9E-9
score: 35.0
IPR002088Protein prenyltransferase, alpha subunitPROSITEPS51147PFTAcoord: 86..120
score: 14.621
IPR002088Protein prenyltransferase, alpha subunitPROSITEPS51147PFTAcoord: 157..191
score: 15.329
IPR002088Protein prenyltransferase, alpha subunitPROSITEPS51147PFTAcoord: 44..79
score: 9.204
IPR002088Protein prenyltransferase, alpha subunitPROSITEPS51147PFTAcoord: 122..156
score: 15.4
NoneNo IPR availableGENE3D1.25.40.120coord: 1..194
e-value: 1.2E-22
score: 80.0
NoneNo IPR availableSUPERFAMILY48439Protein prenylyltransferasecoord: 1..191

Blast
[Close]
BLAST of TCONS_00056511-protein vs. Swiss-Prot (Human)
Match: PGTA (Geranylgeranyl transferase type-2 subunit alpha OS=Homo sapiens GN=RABGGTA PE=1 SV=2)

HSP 1 Score: 219.164 bits (557), Expect = 8.929e-69
Identity = 104/191 (54.45%), Postives = 136/191 (71.20%), Query Frame = 0 
Query:    1 MHGRLKVKTTAQQQEEKRKEREKKVKIFTGAMKQIFTQRGNDELMDSTLQLTQQILASNPDVYTLWNIRKEIFVKKLEV---VEDIDKLLLEELDFLQNCLQVNPKSYGVWNHRMFTMLKMKTPNWPRELKLCNLFLQYDERNFHCWDYRRFVVRESKVPAEEELNYTTEKIKENFSNYSSWHNRSKLLXQ 188
            MHGRLKVKT+ +Q E KR ERE+K+K++  A + +F +R   EL +S L+LT QIL +NPD  TLWN R+E+  ++LE     E++  L+  EL FL++CL+VNPKSYG W+HR + + ++  PNW REL+LC  FL+ DERNFHCWDYRRFV  ++ VP  EEL +T   I  NFSNYSSWH RS LL Q
Sbjct:    1 MHGRLKVKTSEEQAEAKRLEREQKLKLYQSATQAVFQKRQAGELDESVLELTSQILGANPDFATLWNCRREVL-QQLETQKSPEELAALVKAELGFLESCLRVNPKSYGTWHHRCWLLGRLPEPNWTRELELCARFLEVDERNFHCWDYRRFVATQAAVPPAEELAFTDSLITRNFSNYSSWHYRSCLLPQ 190
The following BLAST results are available for this feature:
BLAST of TCONS_00056511-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PGTA8.929e-6954.45Geranylgeranyl transferase type-2 subunit alpha OS... [more]
back to top