TCONS_00056512-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00056512-protein
Unique Name	TCONS_00056512-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	471

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00056512-protein ID=TCONS_00056512-protein|Name=TCONS_00056512-protein|organism=Clytia hemisphaerica|type=polypeptide|length=471bp
SFPAPPTIPTTPTSSSTHDSDSVEDIKVHMQLLQKSAASQFSKANKEFSK
QCTNKLDQFVKDVGSVANEKEERTTQILSNIVNNTIAMKLEKTIRTEMKQ
TVLAGMEKMTAKYFESLNNQVAQKISLWERTLREECAELVKSKPVAESIG
YAAASILEGTIPNAYRESFQSILLPGFEKASMNMFMQINRTFQQGTKQYL
ERLDKHMESKNSNQEDTQENILTNLHDLVQSFQGTADRLTTGVETNLEAL
MQKQLRDATDRMQTTFGKTIESKIIPSLSRTISQSAQDSFKEFKQTIDSS
INSMLSSAAVAAANSSNETFNVHKTIEEKKTYIDRLFEEGDYNTAFETAL
SASDLQIVLFACGKIDPYDLFNPSSGGNTSLTQPIILSLIQQLSQNLTED
TDIKTKYLEESLICIDCNEEVTRTHLPSILQTLNEQLAKTIDALSKESPP
NKKQIRSLKKVQMASNGLFMS

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_035597	XLOC_035597	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00056512	TCONS_00056512	Clytia hemisphaerica	transcript

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 200..220
None	No IPR available	GENE3D	1.10.220.100		coord: 381..466 e-value: 4.5E-17 score: 61.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..22

Blast

[Close]

BLAST of TCONS_00056512-protein vs. Swiss-Prot (Human)
Match: EDC4 (Enhancer of mRNA-decapping protein 4 OS=Homo sapiens GN=EDC4 PE=1 SV=1)

HSP 1 Score: 220.32 bits (560), Expect = 1.137e-62
Identity = 119/362 (32.87%), Postives = 215/362 (59.39%), Query Frame = 0

Query:   82 VNNTIAMKLEKTIRTEMKQTVLAGMEKMTAKYFESLNNQVAQKISLWERTLREECAELVKSKPVAESIGYAAASILEGTIPNAYRESFQSILLPGFEKASMNMFMQINRTFQQGTKQYLERLDKHMESKNSNQEDTQENILTNLHDLVQSFQGTADRLTTGVETNLEALMQKQLRDATDRMQTTFGKTIESKIIPSLSRTISQSAQDSFKEFKQTIDSSINSMLSSAAVAAANSSNETFNVHKTIEEKKTYIDRLFEEGDYNTAFETALSASDLQIVLFACGKIDPYDLFNPSSGGNTSLTQPIILSLIQQLSQNLTEDTDIKTKYLEESLICIDCNEEVTRTHLPSILQTLNEQLAKTIDA 443
            +++ +A +LE++IR E+K+TV   + +        L+N VA K++  E +++E  ++L+KSK + ++I  AAA  L+G +  AYRE+FQS++LP FEK+   MF QIN +F+ GT++YL++L+ HM+S+ + +++ +E +L  L  LV + Q   +++   V  ++ A +Q QL  A   +Q +        I+  + R +      + KE +  + SSI   + SAA     S+      H   + ++ +I +L ++G  N AF+ AL+A+DL +VL+ C  +DP  +F         L+QP++LSLIQQL+ +L   TD+K  YLEE+++ +D ++ +TR H+ S++  + ++L + + A
Sbjct: 1031 LSSAVAGRLERSIRDEIKKTVPPCVSRSLEPMAGQLSNSVATKLTAVEGSMKENISKLLKSKNLTDAIARAAADTLQGPMQAAYREAFQSVVLPAFEKSCQAMFQQINDSFRLGTQEYLQQLESHMKSRKAREQEAREPVLAQLRGLVSTLQSATEQMAATVAGSVRAEVQHQLHVAVGSLQES--------ILAQVQRIVKGEVSVALKEQQAAVTSSIMQAMRSAAGTPVPSA------HLDCQAQQAHILQLLQQGHLNQAFQQALTAADLNLVLYVCETVDPAQVFGQPP---CPLSQPVLLSLIQQLASDLGTRTDLKLSYLEEAVMHLDHSDPITRDHMGSVMAQVRQKLFQFLQA 1375

The following BLAST results are available for this feature:

BLAST of TCONS_00056512-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00056512-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
EDC4	1.137e-62	32.87	Enhancer of mRNA-decapping protein 4 OS=Homo sapie...	[more]

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TCONS_00056512-protein (polypeptide) - C. hemisphaerica