TCONS_00056514-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00056514-protein
Unique Name	TCONS_00056514-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	758

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00056514-protein ID=TCONS_00056514-protein|Name=TCONS_00056514-protein|organism=Clytia hemisphaerica|type=polypeptide|length=758bp
METPELQLQEIECAGNDENTSHQIHSKHVRIKPSISNSFQANTASNKVKV
SQISKLGWKEKFYLGNLVSCNETFFAYIIQARTKEEADSVRVMNQHTSSR
TLIKGFNKRVVDISFESFRSNRLACVDSTGTLHVYEISDGGASSVEYPFQ
FKSIIKISRKEELSDVSSRVVWAPNLLLPVEAGQDTMLALSTGKGAVIFN
LEIILKNHGEDVYLEDIKDGVIILKGCHKETITCLALSPDKRVLATSSVD
GEVKFWGFSFEEPNSEDEEPNCLHEWEPHDGKPVTSLFFCDDLLIADDSS
PFWRYLITGTDYNTTLKVWCAVKWECLQTIEFSQASAEVEKPSKFKVALD
ITAKYLLLADIYNPVVYVCQLHKDDEPSSSFIFYVSEFLLKEPLLSFSIH
VAKERKEKSRSVTSEENGDQGNGENDEDGDQNESLEQNEFSSDHEDNDDA
KERLSIVTLFSTNRASLQKLSIKFKCAPFPGVTAPTNTTSQDDLLSLEDR
LSDLDVSESINTDISDVTDAGRHQREQPAPAPRPPILTASVVEKAIQDST
VPDILPRGSLETEHFKTPAFRESPQLLDFQQDSRAQESVESVRSSNTDLA
TALSLIPDSPTNSLSTNSDGVTGGAALTNSAALLEPILDVVSKSKQEQTP
EEKVQELTTPRSEELFESLSETVNAGLILSPPNTTPTTAINHNKTPLGYS
PSQATAQPPPTTHIQEILQQQQNLIQAQQTELAEIKEMLKVVLSQQQQQL
LRQPIQQV

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_035598	XLOC_035598	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00056514	TCONS_00056514	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR001680	WD40_repeat
IPR032401	EDC4_WD40
IPR015943	WD40/YVTN_repeat-like_dom
IPR017986	WD40_repeat_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 718..738
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 515..535
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 408..448
IPR001680	WD40 repeat	SMART	SM00320	WD40_4	coord: 269..320 e-value: 10.0 score: 10.6 coord: 95..136 e-value: 7.2 score: 11.6 coord: 217..257 e-value: 1.0E-4 score: 31.7
IPR001680	WD40 repeat	PROSITE	PS50082	WD_REPEATS_2	coord: 228..256 score: 11.812
IPR032401	Enhancer of mRNA-decapping protein 4, WD40 repeat region	PFAM	PF16529	Ge1_WD40	coord: 45..375 e-value: 3.9E-84 score: 282.3
IPR015943	WD40/YVTN repeat-like-containing domain	GENE3D	2.130.10.10		coord: 11..458 e-value: 6.1E-24 score: 83.9
IPR017986	WD40-repeat-containing domain	PROSITE	PS50294	WD_REPEATS_REGION	coord: 225..266 score: 10.944
IPR017986	WD40-repeat-containing domain	SUPERFAMILY	50978	WD40 repeat-like	coord: 99..336

Blast

[Close]

BLAST of TCONS_00056514-protein vs. Swiss-Prot (Human)
Match: EDC4 (Enhancer of mRNA-decapping protein 4 OS=Homo sapiens GN=EDC4 PE=1 SV=1)

HSP 1 Score: 286.574 bits (732), Expect = 2.697e-82
Identity = 194/544 (35.66%), Postives = 285/544 (52.39%), Query Frame = 0

Query:    4 PELQLQE---IECAGNDENTSHQIHSKHVRIKPSISNSFQANT-ASNKVKVSQISKLGWKEKFYLGNLVSCNETFFAYIIQARTKEEADSVRVMNQHTSSRTLIKGFNKRVVDISFESFRSNRLACVDSTGTLHVYEISDGGASSVEYPFQFKSIIKISRKEELSDVS--SRVVWAPNLLLPVEAGQDTM-----LALSTGKGAVIFNLEIILKNHGE-DVYLEDIKDGVIILKGCHKETITCLALSPDKRVLATSSVDGEVKFWGFSFEEPNSEDEEPNCLHEWEPHDGKPVTSLFFCDDLLIADDSSPFWRYLITGTDYNTTLKVWCAVKWECLQTIEFS-QASAEVEKPSKFKVALDITAKYLLLADIYNPVVYVCQLHKDDEPSSSFIFYVSEFLLKEPLLSFSIHVAKERKEKSRSVTSEENGDQGNGENDEDGDQNESLEQNEFSSDHEDNDDAKERLS--IVTLFSTNRASLQKLSIKFKCAPFPGVTAPTNT-TSQDDLLSLEDRLSDLDVSESINTDISDVTDAGRHQREQPAPA 531
            P + LQE   I  +G+D +T   I +K V I  S  +S  +    SNKVK+  ++K  W++K+Y GNL++ + +F AY I+A     A  VRV++  TS RTL+KGF   V D++F    S +LAC+D  G L V+ ++      V    Q + ++ I R+ E + ++   R++W P   +P E+          +AL     A +++L+++  +H    V +  IK G I++KG H   ++  ALSPD  VLAT+S DG VKFW    E      +EP CLHEW+PHDG+P++ L FCD+    D   PFWR+LITG D N  LK+WC V W CLQTI FS    + V  P   KV LD++A+YL+L+D+   V+YV +L ++ E   +    +SEFLL  P+LSF I V    + +   V   E       END  G            +D      A E  +  ++ LF  +  +LQ + I+F+    P V AP  T T+ +D    E R  +L  SE + +         R   E PAPA
Sbjct:   70 PPINLQEKQVICLSGDDSSTCIGILAKEVEIVASSDSSISSKARGSNKVKIQPVAKYDWEQKYYYGNLIAVSNSFLAYAIRAANNGSA-MVRVISVSTSERTLLKGFTGSVADLAFAHLNSPQLACLDEAGNLFVWRLA-----LVNGKIQEEILVHI-RQPEGTPLNHFRRIIWCP--FIPEESEDCCEESSPTVALLHEDRAEVWDLDMLRSSHSTWPVDVSQIKQGFIVVKG-HSTCLSEGALSPDGTVLATASHDGYVKFWQIYIEG----QDEPRCLHEWKPHDGRPLSCLLFCDNHKKQDPDVPFWRFLITGADQNRELKMWCTVSWTCLQTIRFSPDIFSSVSVPPSLKVCLDLSAEYLILSDVQRKVLYVMELLQNQEEGHACFSSISEFLLTHPVLSFGIQVVSRCRLRHTEVLPAEE------ENDSLG------------ADGTHGAGAMESAAGVLIKLFCVHTKALQDVQIRFQPQLNPDVVAPLPTHTAHEDFTFGESR-PELG-SEGLGSAAHGSQPDLRRIVELPAPA 579

The following BLAST results are available for this feature:

BLAST of TCONS_00056514-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00056514-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
EDC4	2.697e-82	35.66	Enhancer of mRNA-decapping protein 4 OS=Homo sapie...	[more]

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TCONS_00056514-protein (polypeptide) - C. hemisphaerica