TCONS_00056601-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00056601-protein
Unique NameTCONS_00056601-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length334

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00056601-protein ID=TCONS_00056601-protein|Name=TCONS_00056601-protein|organism=Clytia hemisphaerica|type=polypeptide|length=334bp
MRLSSIRTTCPSQRNCDFISMLSRPMQEHFERISLFTMASSSYEIGGIFN
VLQKTVAVDNTPTSSDEEEPKDTELANLFSFKPPEIIEDKDEENDIPDEL
IKEYISAEDKKPVEPKLKKKNLDDEKEATKKFDEESPERKARTVFVGNVA
LTVKKKVLKKIFSKFGEIESIRIRSVPRADPKTSKKVAFIKKEFHDERDN
MNAYVVFKNKEDAVKSLKSNGIIVEEKHIRVDLSENKKHNTSASIFVGNL
PFNAKEDDLREHFAKCGNIEDIRVVRDKATGIGKGFAYIRFKGKENVMFG
LKMNGSEFDGRKLRVFKAKDKEEVNTTNTAXMNL
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_035649XLOC_035649Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00056601TCONS_00056601Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR034220RBM34_RRM1
IPR034221RBM34_RRM2
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 143..232
e-value: 2.6E-11
score: 53.6
coord: 244..316
e-value: 4.2E-23
score: 92.8
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 144..199
e-value: 1.7E-8
score: 34.0
coord: 245..314
e-value: 3.5E-18
score: 65.1
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 142..236
score: 13.311
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 243..320
score: 19.11
IPR000504RNA recognition motif domainSUPERFAMILY54928RNA-binding domain, RBDcoord: 135..239
IPR000504RNA recognition motif domainSUPERFAMILY54928RNA-binding domain, RBDcoord: 240..324
NoneNo IPR availableGENE3D3.30.70.330coord: 239..331
e-value: 1.8E-27
score: 95.0
NoneNo IPR availableGENE3D3.30.70.330coord: 131..238
e-value: 4.1E-18
score: 64.9
IPR034220RBM34, RNA recognition motif 1CDDcd12394RRM1_RBM34coord: 142..232
e-value: 1.27239E-34
score: 121.983
IPR034221RBM34, RNA recognition motif 2CDDcd12395RRM2_RBM34coord: 244..316
e-value: 7.02849E-32
score: 114.18

Blast
[Close]
BLAST of TCONS_00056601-protein vs. Swiss-Prot (Human)
Match: RBM34 (RNA-binding protein 34 OS=Homo sapiens GN=RBM34 PE=1 SV=2)

HSP 1 Score: 177.948 bits (450), Expect = 3.258e-52
Identity = 91/198 (45.96%), Postives = 129/198 (65.15%), Query Frame = 0 
Query:  133 DEESPERKARTVFVGNVALTVKKKVLKKIFSKFGEIESIRIRSVPRADPKTSKKVAFIKKEFHDERDNMNAYVVFKNKEDAVKSLKSNGI-IVEEKHIRVDLSENKKHNTSASIFVGNLPFNAKEDDLREHFAKCGNIEDIRVVRDKATGIGKGFAYIRFKGKENVMFGLKMNGSEFDGRKLRVFKAKDKEEVNTTNT 329
             EE   +  RTVFVGN+ +T  KK LK  F ++G+IES+R RS+  A+   SKK+A IK++ H ++ N+NAYVVFK +  A ++LK NG  I +   IRVDL+         S+FVGNLP+  +E  + +HF  CG+I  +R+VRDK TGIGKGF Y+ F+  ++V   LK+N SE  GRKLRV ++ +KE+    N+
Sbjct:  176 QEEERLKNERTVFVGNLPVTCNKKKLKSFFKEYGQIESVRFRSLIPAEGTLSKKLAAIKRKIHPDQKNINAYVVFKEESAATQALKRNGAQIADGFRIRVDLASETSSRDKRSVFVGNLPYKVEESAIEKHFLDCGSIMAVRIVRDKMTGIGKGFGYVLFENTDSVHLALKLNNSELMGRKLRVMRSVNKEKFKQQNS 373
The following BLAST results are available for this feature:
BLAST of TCONS_00056601-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RBM343.258e-5245.96RNA-binding protein 34 OS=Homo sapiens GN=RBM34 PE... [more]
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