TCONS_00056763-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00056763-protein
Unique Name	TCONS_00056763-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	650

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00056763-protein ID=TCONS_00056763-protein|Name=TCONS_00056763-protein|organism=Clytia hemisphaerica|type=polypeptide|length=650bp
KIKNVKNKSSRIYNTQLHKMATPGYFEKKSDVAELRTRLQNAMAKKDEKA
CRSAIKKIIQYMTLGIDVSELFPHVIMTSVTNDIVQKKLVYLYICSCAES
NAELALLTVNTLVKDTTDHNPMVRGLALRSMLNMRLPMIIDYVKEPLLSA
LEDRSSYVRRNAVIGCIKFNKLAPNQFEEMGLDAKLMNKLNDNHSQVTMN
AFLALDEVLRETGGLSLTKDIVRKMLSRLPDFNEWSQCMLLNRLVRYQPQ
DEDEIIEYLNFLDDRLTHSNKGVVLAALNLFLRYTKNVDYLAQGFYERIR
SPILSILNSSIPEVVYVTLKNISILIKTRARLFHEDFKIFFLRTNDLSYV
CHQKLEILTDIVTEGNLQNIIEELRQYVRHDDYTVSCQAIQSIGAIGLNH
PFASEPVTYILLDLLKSENDVIIDNALQSLKELMMKYASLSSVVLPEVNE
AWESIQHYSIGKAALVWIYGEYGEDIPSSPYKLEELVDNIQDIDSISVKL
NLLTGMLKLFFKRPPECQKTLGKLFKYFCGGDEDSETNMDIRDRALFYYR
LLQNDIQKAKEIVFSKEDIEQARMSNFIGTLSDDDFRFQEFNTLSIIYGQ
PSSTFIMSSNQLGQPILGKNDNDDDELPHKREKHQSTPEKVPVGNILVSI

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_035755	XLOC_035755	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00056763	TCONS_00056763	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR002553	Clathrin/coatomer_adapt-like_N
IPR016342	AP_complex_bsu_1_2_4
IPR011989	ARM-like
IPR016024	ARM-type_fold

Vocabulary: **Biological Process**
Term	Definition
GO:0006886	intracellular protein transport
GO:0016192	vesicle-mediated transport
GO:0015031	protein transport

Vocabulary: **Cellular Component**
Term	Definition
GO:0030117	membrane coat

Vocabulary: **Molecular Function**
Term	Definition
GO:0008565	protein transporter activity
GO:0005488	binding

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006886	intracellular protein transport
biological_process	GO:0015031	protein transport
biological_process	GO:0016192	vesicle-mediated transport
cellular_component	GO:0030117	membrane coat
molecular_function	GO:0005488	binding
molecular_function	GO:0008565	protein transporter activity

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 32..52
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 615..641
IPR002553	Clathrin/coatomer adaptor, adaptin-like, N-terminal	PFAM	PF01602	Adaptin_N	coord: 37..554 e-value: 8.5E-96 score: 321.5
IPR016342	AP-1, 2,4 complex subunit beta	PIRSF	PIRSF002291	Beta_adaptin	coord: 18..646 e-value: 2.4E-169 score: 563.0
IPR011989	Armadillo-like helical	GENE3D	1.25.10.10		coord: 20..615 e-value: 1.2E-92 score: 310.7
IPR016024	Armadillo-type fold	SUPERFAMILY	48371	ARM repeat	coord: 30..566

Blast

[Close]

BLAST of TCONS_00056763-protein vs. Swiss-Prot (Human)
Match: AP4B1 (AP-4 complex subunit beta-1 OS=Homo sapiens GN=AP4B1 PE=1 SV=2)

HSP 1 Score: 360.147 bits (923), Expect = 1.014e-114
Identity = 213/581 (36.66%), Postives = 336/581 (57.83%), Query Frame = 0

Query:   25 YFEKKSDVAELRTRLQNAMAKKDEKACRSAIKKIIQYMTLGIDVSELFPHVIMTSVTNDIVQKKLVYLYICSCAESNAELALLTVNTLVKDTTDHNPMVRGLALRSMLNMRLPMIIDYVKEPLLSALEDRSSYVRRNAVIGCIKFNKLAPNQFEEMGLDAKLMNKLNDNHSQVTMNAFLALDEVLRETGGLSLTKDIVRKMLSRLPDFNEWSQCMLLNRLVRYQPQDEDEIIEYLNFLDDRLTHSNKGVVLAALNLFLRYTKNVDYLAQGFYERIRSPILSILNSSIPEVVYVTLKNISILIKTRARLFHEDFKIFFLRTNDLSYVCHQKLEILTDIVTEGNLQNIIEELRQYVRHDDYTVSCQAIQSIGAIGLNHPFASEPVTYILLDLLKSENDVIIDNALQSLKELMMKYASLSSVVLPEVNEAWESIQHYSIGKAALVWIYGEYGEDIPSSPYKLEELVDNIQDIDSISVKLNLLTGMLKLFFKRPPECQKTLGKLFKYFCGGDEDSETNMDIRDRALFYYRLLQNDIQKAKEIVFSKEDIEQARMSNFIGTLSDDDFR-----FQEFNTLSIIYGQ 600
            Y   +  V EL+  L N   + D    R+ I+++I+YMT G+D+S +F  ++  S T DIVQKKLVYLY+C+ A    +LALL +NTL KD +D NPMVRGLALRSM ++R+P + +Y+++P+L+ L D++SYVRR AV+GC K + L  +   +  L  +L + L D    V +N   +L+E+L++ GG+ + K I   +L+R+   ++W Q  +LN L+RYQP+ E+E+ + LN LD  L  S+ GVV+ A  LFL   K   ++      R++ P+L+  +S   E+ +V L ++  ++ +    F   +K FF   ++  Y+  QK+E+L ++V + N+Q ++EELR Y        +  AI +IG I   +   ++    IL +LL    + I    +Q+ ++L+      +  V   +    E+IQ  S GK AL+W+ G +GE IP++PY LE+ V+N++     +VK+ LLT +L+LF  RP ECQ  LG+L  Y+C    + E +M +RDR LFYYRLL   I + K I+ S       +    +G L D   R       +FNTL  +YG+
Sbjct:    3 YLGSEDVVKELKKALCNPHIQADRLRYRNVIQRVIRYMTQGLDMSGVFMEMVKASATVDIVQKKLVYLYMCTYAPLKPDLALLAINTLCKDCSDPNPMVRGLALRSMCSLRMPGVQEYIQQPILNGLRDKASYVRRVAVLGCAKMHNLHGDSEVDGALVNELYSLLRDQDPIVVVNCLRSLEEILKQEGGVVINKPIAHHLLNRMSKLDQWGQAEVLNFLLRYQPRSEEELFDILNLLDSFLKSSSPGVVMGATKLFLILAKMFPHVQTDVLVRVKGPLLAACSSESRELCFVALCHVRQILHSLPGHFSSHYKKFFCSYSEPHYIKLQKVEVLCELVNDENVQQVLEELRGYCTDVSADFAQAAIFAIGGIARTY---TDQCVQILTELLGLRQEHITTVVVQTFRDLVWLCPQCTEAVCQALPGCEENIQD-SEGKQALIWLLGVHGERIPNAPYVLEDFVENVKSETFPAVKMELLTALLRLFLSRPAECQDMLGRLL-YYC---IEEEKDMAVRDRGLFYYRLLLVGIDEVKRILCS------PKSDPTLGLLEDPAERPVNSWASDFNTLVPVYGK 569

The following BLAST results are available for this feature:

BLAST of TCONS_00056763-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00056763-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
AP4B1	1.014e-114	36.66	AP-4 complex subunit beta-1 OS=Homo sapiens GN=AP4...	[more]

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TCONS_00056763-protein (polypeptide) - C. hemisphaerica