TCONS_00056813-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00056813-protein
Unique NameTCONS_00056813-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length486

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00056813-protein ID=TCONS_00056813-protein|Name=TCONS_00056813-protein|organism=Clytia hemisphaerica|type=polypeptide|length=486bp
LQNFFKYFLQMEEQIIIGNVAILDVIRNIEEQYQRLLRLLIPGYKSGDSI
TQSDWLNIPLSVRQMIAKKVSSDDIIMENMIKAWKRMNYFKDKSGDDWKN
SYKHNPSRVIQNNQLWCNLTIPTCGKGTELRHGLYHEKDWQNSYGYHCRV
CLDKMYKDVVGNSNCKQCRYPNITDELRTKCFDPYTKEYLKIDNAIMLSV
SCLSSITAFLIVLTFIIFIRLRETPMVKAANRPMTLVQLMSHFLLATVPQ
VLFLGEPTRWKCISKPIIVGLCFTATVSVNLAKTQKLHIIFSSKLVHTNR
QRMAMGLLEWIITGIALLVNTAIMILLFYTSQISVKDIYIEEHYIRQMTC
SNNNQIIIQVFYVLVLVLANGIQAVRARHLPSHFKETTHVIYSSLTTVLL
LGALSAIYFTQKSAKTRDVIMWASLLTMNFLHFSLIYAYKVYIMLFKSHK
NTLEAFQAKRKSRINSKFSTMSVISTQTQSSVIKDR
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_035791XLOC_035791Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00056813TCONS_00056813Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000337GPCR_3
IPR017978GPCR_3_C
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
Vocabulary: Biological Process
TermDefinition
GO:0007186G-protein coupled receptor signaling pathway
Vocabulary: Molecular Function
TermDefinition
GO:0004930G-protein coupled receptor activity
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007186 G-protein coupled receptor signaling pathway
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0004930 G-protein coupled receptor activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 485..486
IPR000337GPCR, family 3PRINTSPR00248GPCRMGRcoord: 270..291
score: 33.24
coord: 362..385
score: 29.17
coord: 224..246
score: 37.36
IPR017978GPCR family 3, C-terminalPFAMPF000037tm_3coord: 209..443
e-value: 8.0E-27
score: 94.4
IPR017978GPCR family 3, C-terminalPROSITEPS50259G_PROTEIN_RECEP_F3_4coord: 196..460
score: 23.456

Blast
[Close]
BLAST of TCONS_00056813-protein vs. Swiss-Prot (Human)
Match: CASR (Extracellular calcium-sensing receptor OS=Homo sapiens GN=CASR PE=1 SV=3)

HSP 1 Score: 93.9745 bits (232), Expect = 3.524e-20
Identity = 78/312 (25.00%), Postives = 141/312 (45.19%), Query Frame = 0 
Query:  146 YHCRVCLDKMYKDVVGNSNCKQCRYPNITDELRTKCFDPYTKEYLKIDNAIMLSVSCLSSITAFLIVLTFIIFIRLRETPMVKAANRPMTLVQLMSHFLLATVPQVLFLGEPTRWKCISKPIIVGLCFTATVSVNLAKTQKLHIIFSSKLVHTNRQRMAMGL-LEWIITGIALLVNTAIMILLFYTSQISVKDIYIEEHYIRQMTCSNNNQIIIQ--VFYVLVLVLANGIQAVRARHLPSHFKETTHVIYSSLTTVLLLGALSAIYFTQKSAKTRDVIMWASLLTMNFLHFSLIYAYKVYIMLFKSHKNTLE 454
            + C  C D  Y D    S C +C     ++E  T C      E+L       ++++  + +  FL      +FI+ R TP+VKA NR ++ + L S     +   + F+GEP  W C  +    G+ F   +S  L KT ++ ++F +K + T+  R   GL L++++  +   +   I ++  YT+  S       E  I  +TC   + + +   + Y  +L       A ++R LP +F E   + +S L   ++  +    Y      K    +   ++L  +F   + I+  K+YI+LFK  +NT+E
Sbjct:  563 FECVECPDGEYSDETDASACNKCPDDFWSNENHTSCIAKEI-EFLSWTEPFGIALTLFAVLGIFLTAFVLGVFIKFRNTPIVKATNRELSYLLLFSLLCCFSS-SLFFIGEPQDWTCRLRQPAFGISFVLCISCILVKTNRVLLVFEAK-IPTSFHRKWWGLNLQFLLVFLCTFMQIVICVIWLYTAPPSSYRNQELEDEIIFITCHEGSLMALGFLIGYTCLLAAICFFFAFKSRKLPENFNEAKFITFSMLIFFIVWISFIPAY-ASTYGKFVSAVEVIAILAASFGLLACIFFNKIYIILFKPSRNTIE 870
The following BLAST results are available for this feature:
BLAST of TCONS_00056813-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CASR3.524e-2025.00Extracellular calcium-sensing receptor OS=Homo sap... [more]
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