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Sequence
The following sequences are available for this feature:
polypeptide sequence >TCONS_00056844-protein ID=TCONS_00056844-protein|Name=TCONS_00056844-protein|organism=Clytia hemisphaerica|type=polypeptide|length=973bp
MNDGEGVVVDISQERKVITKNTGELQINFSNSQIRGDDDNTDSNGSAKNP
QSTDKDVIIANSCNSEQEKDQTNKSEKKKNSTRICNKFSKAGKCNKGDEC
RFRHVLKEQTAASTESPQPSTEDLHQSSTEELPKPSPVKTCKYFQSQMGC
KFDDDCSYQHYRGEVDAADETHLNQNESVELKPNNALHSDDTINNILKVL
AERNDNSQSHKDTNEINNVSGDKNASVSKPTNTEVKNDIGYHPTIPRSRD
DKLICKFFLSEHGCDRTNCRFIHVRKKGGSVPTSPIKEDIPENLNSDTVN
KDTGQIDFQQNDGNAIVDEMKNEEGQSASNDGKNNQVVCKFFNTKKSCYK
KLKCPNLHVSDGKDKNSNQSIDKSNAKEVTQNDDTKDKDNIEKKMEKLQV
TDKKDEPKKQRRCRYFAKDLNCKQGDKCGFLHDISTTGTDSLPAKKEEKS
QEELRAIEIKQLEKRWKGNYECLEKEPISIYKVSITPTDPDWPFVVKLFV
LHVEFPEKYPDKMLKLKLVDSDQYPPHFAGYMNEALFDWCTDRFKDYGAG
LHFRPFCKWFDKHLKQLFELSATKVKLQLQAEQAGIQLVHHRNIIQKSQQ
LESKDEDEEEKEKEDEIVNGKEETASMQETNEASKADQNLLDVATGGCDE
DTNSMFGTQETAGSSKNNNDKYKCSENVKKGTEIKLPNLQIGDKIGTLRI
RSCLVQLICERCKSKHDFKLESKQSLSKRCSKCSQTLNATYYSELVHQFS
PVAGYLHLQGCIAFDLILNDCTIILNCIDCQKDNILRALTRGSKKDHWCQ
YCHVKMDLQIPTIKFYNLQPVFGGGKQTMMKKEIETKKKKNVLREPGIKE
GQPLPDTGTCKHYKKSHRWLRFPCCGKAFPCDICHEEGVAGDHEMKVANR
MICGYCSKEQPFSKDKPCTSCKSGVIKGHSTHWEGGQGCRDKSKMARGDK
HKTAGLGKTISRKKEDLKPNKKK Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
This polypeptide derives from the following transcript feature(s):
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0046872 | metal ion binding |
| GO:0008270 | zinc ion binding |
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0046872 |
metal ion binding |
| molecular_function |
GO:0008270 |
zinc ion binding |
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| None | No IPR available | COILS | Coil | Coil | coord: 594..614 |
| None | No IPR available | GENE3D | 4.10.1000.10 | | coord: 127..175
e-value: 0.013
score: 14.7
coord: 399..451
e-value: 6.5E-6
score: 25.3
coord: 69..126
e-value: 6.1E-8
score: 31.8
coord: 203..282
e-value: 0.17
score: 11.2 |
| None | No IPR available | GENE3D | 4.10.1000.10 | | coord: 320..387
e-value: 0.0074
score: 15.8 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 359..405 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 109..137 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 277..304 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 203..243 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 932..973 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 29..81 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 599..636 |
| None | No IPR available | SUPERFAMILY | 161219 | CHY zinc finger-like | coord: 851..922 |
| IPR000571 | Zinc finger, CCCH-type | SMART | SM00356 | c3hfinal6 | coord: 136..162
e-value: 8.3
score: 9.0
coord: 407..434
e-value: 0.39
score: 19.5
coord: 250..275
e-value: 3.5
score: 12.0
coord: 333..360
e-value: 1.2
score: 15.6
coord: 79..106
e-value: 7.5E-7
score: 38.8 |
| IPR000571 | Zinc finger, CCCH-type | PFAM | PF00642 | zf-CCCH | coord: 82..105
e-value: 4.4E-5
score: 23.2 |
| IPR000571 | Zinc finger, CCCH-type | PROSITE | PS50103 | ZF_C3H1 | coord: 79..107
score: 15.319 |
| IPR000571 | Zinc finger, CCCH-type | PROSITE | PS50103 | ZF_C3H1 | coord: 249..276
score: 9.911 |
| IPR000571 | Zinc finger, CCCH-type | PROSITE | PS50103 | ZF_C3H1 | coord: 407..435
score: 13.835 |
| IPR000571 | Zinc finger, CCCH-type | PROSITE | PS50103 | ZF_C3H1 | coord: 333..361
score: 10.915 |
| IPR000571 | Zinc finger, CCCH-type | PROSITE | PS50103 | ZF_C3H1 | coord: 135..163
score: 11.16 |
| IPR000571 | Zinc finger, CCCH-type | SUPERFAMILY | 90229 | CCCH zinc finger | coord: 77..104 |
| IPR000571 | Zinc finger, CCCH-type | SUPERFAMILY | 90229 | CCCH zinc finger | coord: 413..447 |
| IPR016135 | Ubiquitin-conjugating enzyme/RWD-like | GENE3D | 3.10.110.10 | | coord: 452..617
e-value: 1.2E-4
score: 21.6 |
| IPR008913 | Zinc finger, CHY-type | PFAM | PF05495 | zf-CHY | coord: 860..923
e-value: 2.1E-11
score: 44.1 |
| IPR008913 | Zinc finger, CHY-type | PROSITE | PS51266 | ZF_CHY | coord: 853..923
score: 21.613 |
Blast
The following BLAST results are available for this feature:
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