TCONS_00056874-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00056874-protein
Unique NameTCONS_00056874-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length485

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00056874-protein ID=TCONS_00056874-protein|Name=TCONS_00056874-protein|organism=Clytia hemisphaerica|type=polypeptide|length=485bp
QPTTERKAMRVRGIHFSQLVVASLVGIAETTAMESSKIFAKNNIKPPVEG
RCGFFVKRKQRYCKMKPTKGNQFCAEHAQFDKEQDEGEKRKRIPCPLDPK
HSVFEDKLSSHMKKCNATKKTNLPFFDKNINIGINHYIRSEKEKLRLYEV
PIDELKNLIEKLRDIHKKVINLISQSENTTIHQLLSNEIETQKDCGQNVK
KHLVQQGSLIQILDDNEFFRHDVNVIEFGAGRGALSHWVQKAMSSKEGSQ
QYFLIDRQHNRNKLDCYHKGEDQGPNFQRLNIDIINLNLNKVDALVKDNG
EVSNILAIGKHLCGGATDLSLRCLLNDQNNKSNSSGEEPSEKRSKTTNKF
RENLHGILFALCCYHRCTWDTYVGLDFMQKHDVTPTQFHFMTKMATWSTC
GFERRQHEDHIADDESDETNTLNEGKIHHKLKFSIAEQEEIGHMCKLLID
YGRIQYIESRGFKPHLVKYISRDVTPENIALLVNK
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_035831XLOC_035831Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00056874TCONS_00056874Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007871Methyltransferase_TRM13
IPR022776TRM13/UPF0224_CHHC_Znf_dom
IPR021721Znf_CCCH-type_TRM13
Vocabulary: Biological Process
TermDefinition
GO:0008033tRNA processing
Vocabulary: Molecular Function
TermDefinition
GO:0008168methyltransferase activity
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008033 tRNA processing
molecular_function GO:0008168 methyltransferase activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 152..172
IPR007871Methyltransferase TRM13PFAMPF05206TRM13coord: 204..483
e-value: 6.1E-82
score: 275.0
IPR022776TRM13/UPF0224 family, U11-48K-like CHHC zinc finger domainPFAMPF05253zf-U11-48Kcoord: 92..116
e-value: 2.1E-8
score: 33.8
IPR022776TRM13/UPF0224 family, U11-48K-like CHHC zinc finger domainPROSITEPS51800ZF_CHHC_U11_48Kcoord: 92..119
score: 13.917
IPR021721Zinc finger, CCCH-type, TRM13PFAMPF11722zf-TRM13_CCCHcoord: 50..78
e-value: 6.5E-12
score: 44.9

Blast
[Close]
BLAST of TCONS_00056874-protein vs. Swiss-Prot (Human)
Match: TRM13 (tRNA:::m(4)X modification enzyme TRM13 homolog OS=Homo sapiens GN=TRMT13 PE=1 SV=2)

HSP 1 Score: 282.722 bits (722), Expect = 6.029e-90
Identity = 161/468 (34.40%), Postives = 262/468 (55.98%), Query Frame = 0 
Query:   47 PVEGRCGFFVKRKQRYCKMKPTKGNQFCAEHAQFDKEQDEGEKRKRIPCPLDPKHSVFEDKLSSHMKKCNATKKTNLPFFDKNINIGINHYIRSEKEKLRLYEVPIDELKNLIEKLRDIHKKVINLISQSENTTIHQLLSNEIETQKDCGQNVKKHLVQQGSLIQILDDNEFFRHDVNVIEFGAGRGALSHWVQKAMSSKEGSQQYFLIDRQHNRNKLDCYHKGEDQGPNFQRLNIDIINLNLNKVDALVKDNGEVSNILAIGKHLCGGATDLSLRCLLNDQNNKSNSSGEEPSEKRSKTTNKFRE------------------NLHGILFALCCYHRCTWDTYVGLDFMQKHDVTPTQFHFMTKMATWSTCGFERRQHEDHIA-----DDESDETNTLNEGKIHHKLK----------FSIAEQEEIGHMCKLLIDYGRIQYIESRGFKPHLVKYISRDVTPENIAL 481
            P EGRCG++V++K+R+C+M    G +FC EHA   +E+D    RKRI CPLDPKH+V+ED+L+ H+KKCN+ +K    F+ ++IN G+       ++ + +  +  ++L+ LI+KLR   + + + +   ++   H  L + +   K+ G +  KHL QQ S++  +++ +        +EFGAG+G LSHWV  A+   E    + L+++   R K+D  H+ ++    F+RL IDI +L LNK+  L +   E   ++ IGKHLCG ATDL+LRCL+           EEP  KR K     +E                   + GI+ ALCC+HRC W  YVG ++ +   +   +FH+  +M++W+TCG  +   E   +     D+++D++   ++G   +++            S+ E+++IGH+CKLLID GRIQY++ +GF P L  Y    V+ EN+ L
Sbjct:   14 PAEGRCGYYVEKKKRFCRMVVAAGKRFCGEHAGAAEEED---ARKRILCPLDPKHTVYEDQLAKHLKKCNSREKPKPDFYIQDINAGLRDETEIPEQLVPISSLSEEQLEKLIKKLRKASEGLNSTL--KDHIMSHPALHDALNDPKN-GDSATKHLKQQASILGNIENLKLLGPRRCFVEFGAGKGKLSHWVDIALKDAE-KVHFILVEKVTTRFKVDGKHRKKNS--VFERLQIDIQHLCLNKIPVLRE---EKLPVVGIGKHLCGMATDLALRCLVETYAASFEERNEEPLAKRIKNDKTEKEIYTLAKEGNEKNVPEKWNPVAGIVIALCCHHRCDWRHYVGKEYFRALGLGAVEFHYFQRMSSWATCGMRKTSLETSNSTTKRQDNQNDDSEEHDDGG--YRITDDGADCLPGLLSVEEKKKIGHLCKLLIDQGRIQYLQQKGFSPALQYYTDPLVSLENVLL 467
The following BLAST results are available for this feature:
BLAST of TCONS_00056874-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TRM136.029e-9034.40tRNA:::m(4)X modification enzyme TRM13 homolog OS=... [more]
back to top