TCONS_00056973-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00056973-protein
Unique NameTCONS_00056973-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length351

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00056973-protein ID=TCONS_00056973-protein|Name=TCONS_00056973-protein|organism=Clytia hemisphaerica|type=polypeptide|length=351bp
MKIDKHVKYFIRCLNALPGAYTSIDTSRMTILFFALSGLDLLNALDKIEN
DKNKIIDWIYSLQILPGENTADKDTKKCGFRGSSFLGGEFNPDGCFTTSE
IYEGSHIAMTYTALLSLLILGDDLSRVNKKAITENLKSLQLKNGSFYSTP
EGSENDMRFLYCACCISYIIDNWSGVNKKLAVKYVQKSMGYDHGISQGPQ
LESHGGSTFCAVASLHLMGELENCFDCKKLEKLKRWCLVRQKSGFQGRPN
KPVDTCYSFWVGASLKLLDCFQFVDIEKNREFLLTTQHNITGGFSKWPNY
HSDALHTYFGICGMSLMNLYNLQPLSPALNISERAHQHLKTLHNTNTMDI
S
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_035878XLOC_035878Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00056973TCONS_00056973Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001330PFTB_repeat
IPR008930Terpenoid_cyclase/PrenylTrfase
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003824 catalytic activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001330PFTB repeatPFAMPF00432Prenyltranscoord: 275..318
e-value: 3.1E-10
score: 39.5
coord: 244..269
e-value: 2.2E-6
score: 27.2
coord: 128..165
e-value: 0.003
score: 17.2
coord: 178..219
e-value: 0.0026
score: 17.4
NoneNo IPR availableGENE3D1.50.10.20coord: 1..350
e-value: 4.6E-103
score: 344.9
NoneNo IPR availableCDDcd02895GGTase-Icoord: 3..317
e-value: 3.94918E-148
score: 422.458
IPR008930Terpenoid cyclases/protein prenyltransferase alpha-alpha toroidSUPERFAMILY48239Terpenoid cyclases/Protein prenyltransferasescoord: 3..344

Blast
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BLAST of TCONS_00056973-protein vs. Swiss-Prot (Human)
Match: PGTB1 (Geranylgeranyl transferase type-1 subunit beta OS=Homo sapiens GN=PGGT1B PE=1 SV=2)

HSP 1 Score: 433.335 bits (1113), Expect = 2.483e-152
Identity = 198/342 (57.89%), Postives = 266/342 (77.78%), Query Frame = 0 
Query:    4 DKHVKYFIRCLNALPGAYTSIDTSRMTILFFALSGLDLLNALDKIENDKNKIIDWIYSLQILPGENTADKDTKKCGFRGSSFLGGEFNPDGCFTTSEIYEGSHIAMTYTALLSLLILGDDLSRVNKKAITENLKSLQLKNGSFYSTPEGSENDMRFLYCACCISYIIDNWSGVNKKLAVKYVQKSMGYDHGISQGPQLESHGGSTFCAVASLHLMGELENCFDCKKLEKLKRWCLVRQKSGFQGRPNKPVDTCYSFWVGASLKLLDCFQFVDIEKNREFLLTTQHNITGGFSKWPNYHSDALHTYFGICGMSLMNLYNLQPLSPALNISERAHQHLKTLHNT 345
            D+HV++F RCL  LP  Y+S++TSR+TI FFALSGLD+L++LD +  +K+ II+WIYSLQ+LP E+ ++ +  +CGFRGSS+LG  FNP     T+  Y+  HIAMTYT L  L+ILGDDLSRVNK+A    L++LQL++GSF + PEGSENDMRF+YCA CI Y+++NWSG++ K A+ Y+++SM YD+G++QG  LESHGGSTFC +ASL LMG+LE  F  K+L ++KRWC++RQ++G+ GRPNKPVDTCYSFWVGA+LKLL  FQ+ + EKNR ++L+TQ  + GGF+KWP+ H DALH YFGICG+SLM    +  + PALN+S R  + L  LH +
Sbjct:   23 DRHVRFFQRCLQVLPERYSSLETSRLTIAFFALSGLDMLDSLDVV--NKDDIIEWIYSLQVLPTEDRSNLN--RCGFRGSSYLGIPFNPSKAPGTAHPYDSGHIAMTYTGLSCLVILGDDLSRVNKEACLAGLRALQLEDGSFCAVPEGSENDMRFVYCASCICYMLNNWSGMDMKKAITYIRRSMSYDNGLAQGAGLESHGGSTFCGIASLCLMGKLEEVFSEKELNRIKRWCIMRQQNGYHGRPNKPVDTCYSFWVGATLKLLKIFQYTNFEKNRNYILSTQDRLVGGFAKWPDSHPDALHAYFGICGLSLMEESGICKVHPALNVSTRTSERLLDLHQS 360
The following BLAST results are available for this feature:
BLAST of TCONS_00056973-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PGTB12.483e-15257.89Geranylgeranyl transferase type-1 subunit beta OS=... [more]
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