TCONS_00057034-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00057034-protein
Unique NameTCONS_00057034-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length320

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00057034-protein ID=TCONS_00057034-protein|Name=TCONS_00057034-protein|organism=Clytia hemisphaerica|type=polypeptide|length=320bp
RGFTFYCFFYLLILERLKEKKGEKILKNMSHEHLPPGHKHADHPPIKLSI
EIKIDEHMVGTCNIFLQNIYKPLEIIDGNGNVFSFIPSKKIYGTTFISID
EDLIVQKISNEVQKLNTIQHDIRETMDDLLDSVEGRLGQDVDHETSLKHL
VLENNTQHELADSFGESRGSTSTKKVTTQGMKNFNVNKREPILAGANSSN
QKGMMIGTINEINKDSTVHPLPSQKYNWSDWFECKVCGETFTRTSHYEKH
VRVNHIGVKPFHCDACGKGFSRKDDMKKHYNSRHLGIKQFVCKVCGEGFV
KRNRMENHHYEAHVYNKTNN
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_035929XLOC_035929Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00057034TCONS_00057034Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013087Znf_C2H2_type
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
ZOOM
x 1
POSITION
0
50100150200250300Score = Expect = 7.8E-5 / Score = 22.2SequenceSM00355PS00028PS00028PS00028PS50157PS50157PS50157SSF57667PF00096G3DSA:2.20.28.10G3DSA:3.30.160.60PF12874G3DSA:3.30.160.60G3DSA:3.30.160.60
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013087Zinc finger C2H2-typeSMARTSM00355c2h2final6coord: 290..313
e-value: 0.13
score: 21.3
coord: 232..255
e-value: 0.0049
score: 26.1
coord: 261..284
e-value: 0.003
score: 26.8
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 234..255
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 292..313
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 263..284
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 290..318
score: 10.679
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 232..260
score: 14.17
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 261..289
score: 12.508
IPR013087Zinc finger C2H2-typeSUPERFAMILY57667beta-beta-alpha zinc fingerscoord: 230..279
NoneNo IPR availablePFAMPF00096zf-C2H2coord: 232..255
e-value: 1.5E-5
score: 25.1
NoneNo IPR availableGENE3D2.20.28.10coord: 270..290
e-value: 2.2E-7
score: 30.2
NoneNo IPR availableGENE3D3.30.160.60coord: 291..314
e-value: 0.005
score: 16.3
coord: 250..269
e-value: 1.9E-11
score: 43.3
NoneNo IPR availablePFAMPF12874zf-metcoord: 261..283
e-value: 1.4E-4
score: 22.0
NoneNo IPR availableGENE3D3.30.160.60coord: 239..249
e-value: 4.8E-4
score: 19.9
NoneNo IPR availableGENE3D3.30.160.60coord: 30..238
e-value: 7.8E-5
score: 22.2

Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00057034-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 0
ZOOM
x 1
POSITION
0
50100150200250300Sequence
Match NameE-valueIdentityDescription
back to top