TCONS_00057165-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00057165-protein
Unique Name	TCONS_00057165-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	262

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00057165-protein ID=TCONS_00057165-protein|Name=TCONS_00057165-protein|organism=Clytia hemisphaerica|type=polypeptide|length=262bp
MAKNIDDELHEAFPLITSSSSTSYYESCENNKILSSGKLGTDDSKTLRRN
MKFHHCFAFVVGCIVGAGIFIAPSLVAQYTPNLFVALLAWTLAGGIALLG
ALCYCEMVSVVNKTGASYIFILDCYGKAAGFIVNWTNALIFAPCDACILL
ITIGLYACAPFFEDHNSVEYLWCAKLVGGACMIVIAGVNCLGAKKSGIFQ
IIFISIQVILFLVVIIMSIYAAVHDGTYQNLLPETTFNNTISSFKKDFPA
FSIALFNALYCF

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_036024	XLOC_036024	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00057165	TCONS_00057165	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR002293	AA/rel_permease1

Vocabulary: **Molecular Function**
Term	Definition
GO:0015171	amino acid transmembrane transporter activity

Vocabulary: **Cellular Component**
Term	Definition
GO:0016020	membrane

Vocabulary: **Biological Process**
Term	Definition
GO:0003333	amino acid transmembrane transport

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0003333	amino acid transmembrane transport
cellular_component	GO:0016020	membrane
molecular_function	GO:0015171	amino acid transmembrane transporter activity

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002293	Amino acid/polyamine transporter I	PFAM	PF13520	AA_permease_2	coord: 55..261 e-value: 7.1E-18 score: 64.5

Blast

[Close]

BLAST of TCONS_00057165-protein vs. Swiss-Prot (Human)
Match: YLAT2 (Y+L amino acid transporter 2 OS=Homo sapiens GN=SLC7A6 PE=1 SV=3)

HSP 1 Score: 102.834 bits (255), Expect = 5.552e-25
Identity = 63/229 (27.51%), Postives = 115/229 (50.22%), Query Frame = 0

Query:   34 LSSGKLGTDDSKTLRRNMKFHHCFAFVVGCIVGAGIFIAPSLVAQYTPNLFVALLAWTLAGGIALLGALCYCEMVSVVNKTGASYIFILDCYGKAAGFIVNWTNALIFAPCDACILLITIGLYACAPFFEDHNSVEYLWCAKLVGGACMIVIAGVNCLGAKKSGIFQIIFISIQVILFLVVIIMSIYAAVHDGTYQNLLPETTFNNTISSFKKDFPAFSIALFNALYCF 262
            +SS    + ++  L++ +   +  + VVG ++G+GIF++P  V  +T +  ++L+ W + G  +++GALCY E+ + + K+GASY +IL+ +G    FI  W + L+  P    I+ IT   Y   P F   +   YL C +L+  AC+ ++  VNC   K     Q  F   +V+  + +I+M +       +         F +       D    S+AL++AL+ +
Sbjct:   28 VSSPPQRSSETMQLKKEISLLNGVSLVVGNMIGSGIFVSPKGVLVHTASYGMSLIVWAIGGLFSVVGALCYAELGTTITKSGASYAYILEAFGGFIAFIRLWVSLLVVEPTGQAIIAITFANYIIQPSFPSCDP-PYLAC-RLLAAACICLLTFVNCAYVKWGTRVQDTFTYAKVVALIAIIVMGLVKLCQGHSEH-------FQDAFEGSSWDMGNLSLALYSALFSY 247

The following BLAST results are available for this feature:

BLAST of TCONS_00057165-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00057165-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
YLAT2	5.552e-25	27.51	Y+L amino acid transporter 2 OS=Homo sapiens GN=SL...	[more]

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TCONS_00057165-protein (polypeptide) - C. hemisphaerica