TCONS_00057198-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00057198-protein
Unique NameTCONS_00057198-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length315

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00057198-protein ID=TCONS_00057198-protein|Name=TCONS_00057198-protein|organism=Clytia hemisphaerica|type=polypeptide|length=315bp
PQDGHWGRWSSWGECSHQCGEGKEKRTRKCDDPETKNGGKNCPGESVQSK
DCYIKPCALEPDDCLFDGQGMCFWQDKSYDKSYMWKRVTGGTPTPSTGPD
SDHTTQNTTKNGHYMLAESSSPARLGMKASLVSKVFKSTTSVKCLTFFYS
MHGMGIGVLRVFVKFPYSGKENKVWEMIGPQGPGWKVAEVDIPEKPDNYN
ERNSYIFLDYKIRFEAERGHSFQGDIALDDIFIVNSLCSKKKTLVPILST
TPTTTTTTTTTTTTTATTTPTTATTTPTTTTTTPTTTTTTPTTTTTTPTT
TTSTPTTTTGMSDTL
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_036043XLOC_036043Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00057198TCONS_00057198Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000998MAM_dom
IPR000884TSP1_rpt
IPR013320ConA-like_dom
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016020 membrane
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePRINTSPR01705TSP1REPEATcoord: 41..52
score: 31.99
coord: 22..33
score: 40.7
coord: 4..17
score: 46.68
NoneNo IPR availableGENE3D2.60.120.200coord: 59..240
e-value: 1.7E-43
score: 147.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 15..47
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 251..315
IPR000998MAM domainSMARTSM00137MAM_2coord: 59..240
e-value: 9.7E-35
score: 131.4
IPR000998MAM domainPFAMPF00629MAMcoord: 64..238
e-value: 8.9E-36
score: 123.1
IPR000998MAM domainPROSITEPS00740MAM_1coord: 112..153
IPR000998MAM domainPROSITEPS50060MAM_2coord: 62..240
score: 32.565
IPR000998MAM domainCDDcd06263MAMcoord: 64..238
e-value: 3.91553E-42
score: 143.672
IPR000884Thrombospondin type-1 (TSP1) repeatSMARTSM00209TSP1_2coord: 6..58
e-value: 4.8E-12
score: 56.0
IPR000884Thrombospondin type-1 (TSP1) repeatPFAMPF00090TSP_1coord: 8..57
e-value: 2.0E-9
score: 37.4
IPR000884Thrombospondin type-1 (TSP1) repeatGENE3D2.20.100.10coord: 2..57
e-value: 5.0E-16
score: 58.2
IPR000884Thrombospondin type-1 (TSP1) repeatPROSITEPS50092TSP1coord: 3..58
score: 13.142
IPR000884Thrombospondin type-1 (TSP1) repeatSUPERFAMILY82895TSP-1 type 1 repeatcoord: 1..57
IPR013320Concanavalin A-like lectin/glucanase domainSUPERFAMILY49899Concanavalin A-like lectins/glucanasescoord: 62..238

Blast
[Close]
BLAST of TCONS_00057198-protein vs. Swiss-Prot (Human)
Match: MAMC2 (MAM domain-containing protein 2 OS=Homo sapiens GN=MAMDC2 PE=2 SV=3)

HSP 1 Score: 94.3597 bits (233), Expect = 1.831e-21
Identity = 63/171 (36.84%), Postives = 86/171 (50.29%), Query Frame = 0 
Query:   61 PDDCLFDGQGMCFWQDKSYDKSYMWKRVTGGTPTPSTGPDSDHTTQNTTKNGHYMLAESSSPARLGMKASLVSKVFKSTTSVKCLTFFYSMHGMGIGVLRVFVKFPYSGKENKVWEMIGPQGPGWKVAEVDIPEKPDNYNERNSYIFLDYKIRFEAERGHSFQGDIALDDI 231
            P +C F+     F Q+K    S  W R  G TPT  TGP  DHTT      G+YM  E+S     G KA L+S+  +  +   CLTFFY M+G G G+L V++K     +E+ +W   G Q   W  A ++         ER       ++I FEA RG S + DIA+DD+
Sbjct:  506 PGECTFEQDECTFTQEKRNRSS--WHRRRGETPTSYTGPKGDHTT----GVGYYMYIEASHMV-YGQKARLLSRPLRGVSGKHCLTFFYHMYGGGTGLLSVYLKKEEDSEESLLWRRRGEQSISWLRALIEYS------CERQ------HQIIFEAIRGVSIRSDIAIDDV 657
The following BLAST results are available for this feature:
BLAST of TCONS_00057198-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MAMC21.831e-2136.84MAM domain-containing protein 2 OS=Homo sapiens GN... [more]
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