TCONS_00057254-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00057254-protein
Unique NameTCONS_00057254-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length268

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00057254-protein ID=TCONS_00057254-protein|Name=TCONS_00057254-protein|organism=Clytia hemisphaerica|type=polypeptide|length=268bp
MSELSAWDYVVFALMLVGSSLIGLYHGWKGSRVKEDTTDYLLAGRNMGWL
PLFVSIVGSFLSAISLLGIPSEIYTYGGQFFLTIASFWVVMPLCIFIFAP
LYRNIGITSANEYLELRFSRPVRIFGGVLFILQTVMYLSVVMYAPSLALE
AVAGLRLEISLVVTVIICNIYTTIGGMKGVIWTDVFQTCIILIGLIVVLI
IGTTQVGSFGDVIKIASDGGRTDIFRFDADPSIRNTFWGFIFGYTFTLMP
FFCCGQICVQRYLSAKSN
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_036067XLOC_036067Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00057254TCONS_00057254Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001734Na/solute_symporter
Vocabulary: Biological Process
TermDefinition
GO:0006810transport
GO:0055085transmembrane transport
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: Molecular Function
TermDefinition
GO:0005215transporter activity
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055085 transmembrane transport
biological_process GO:0006810 transport
cellular_component GO:0016020 membrane
molecular_function GO:0005215 transporter activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001734Sodium/solute symporterPFAMPF00474SSFcoord: 40..267
e-value: 4.4E-35
score: 121.2
IPR001734Sodium/solute symporterTIGRFAMTIGR00813TIGR00813coord: 40..267
e-value: 9.7E-57
score: 190.8
IPR001734Sodium/solute symporterPROSITEPS50283NA_SOLUT_SYMP_3coord: 5..268
score: 36.846

Blast
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BLAST of TCONS_00057254-protein vs. Swiss-Prot (Human)
Match: SC5A6 (Sodium-dependent multivitamin transporter OS=Homo sapiens GN=SLC5A6 PE=2 SV=2)

HSP 1 Score: 221.476 bits (563), Expect = 5.039e-68
Identity = 120/268 (44.78%), Postives = 176/268 (65.67%), Query Frame = 0 
Query:    1 MSELSAWDYVVFALMLVGSSLIGLYHGWKGSRVKEDTTDYLLAGRNMGWLPLFVSIVGSFLSAISLLGIPSEIYTYGGQFFLTIASFWVVMPLCIFIFAPLYRNIGITSANEYLELRFSRPVRIFGGVLFILQTVMYLSVVMYAPSLALEAVAGLRLEISLVVTVIICNIYTTIGGMKGVIWTDVFQTCIILIGLIVVLIIGTTQVGSFGDVIKIASDGGRTDIFRFDADPSIRNTFWGFIFGYTFTLMPFFCCGQICVQRYLSAKSN 268
            MS  S  DYVVF L+LV S  IGLYH  +G   +    + L+A R MG LP+ +S++ +F SA+++LG+PSEIY +G Q++     +++ + +   IF P++  + +TSA EYLELRF++ VR+ G V FI Q V+Y+ VV+YAPSLAL AV G  L +S++   I+C +YT +GG+K VIWTDVFQT ++ +G + V+I+G+ +VG  G V  +AS  GR   F  D DP +R+TFW   FG  F ++  +   Q  VQRYLS+++ 
Sbjct:   21 MSTFSIMDYVVFVLLLVLSLAIGLYHACRGWG-RHTVGELLMADRKMGCLPVALSLLATFQSAVAILGVPSEIYRFGTQYWFLGCCYFLGLLIPAHIFIPVFYRLHLTSAYEYLELRFNKTVRVCGTVTFIFQMVIYMGVVLYAPSLALNAVTGFDLWLSVLALGIVCTVYTALGGLKAVIWTDVFQTLVMFLGQLAVIIVGSAKVGGLGRVWAVASQHGRISGFELDPDPFVRHTFWTLAFGGVFMMLSLYGVNQAQVQRYLSSRTE 287
The following BLAST results are available for this feature:
BLAST of TCONS_00057254-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SC5A65.039e-6844.78Sodium-dependent multivitamin transporter OS=Homo ... [more]
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