TCONS_00057256-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00057256-protein
Unique NameTCONS_00057256-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length341

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00057256-protein ID=TCONS_00057256-protein|Name=TCONS_00057256-protein|organism=Clytia hemisphaerica|type=polypeptide|length=341bp
MSGTTLSQTQENIKEMKDQKTSAVPTKYVKLNVGGSLFYTTLGTLTKRXK
DQKTSAVPTKYVKLNVGGSLFYTTLGTLTKRADSMLRAMFSGRMEVLTDT
EGWVLIDRSGKHFGTILNYLRDGEVPMPDSKAELKEFLAETKFYCLQALS
AEVEEALRKKGEDIEPKCQVPLVTSQAEDRTLIMNTEKPVIKLVCNRYNN
KYSYTSQSDENILKNLELFDKLCIRFNGRILFLKDIIANDEICCWMFYGN
GKKVTEVCCTSIVYATERKHTKVEFPEARIYEDTLNILLFEGRGETAFDN
ELFRATKVSKPSHHNNDESDDNSSGPSGSGVRRHRALANEG
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_036069XLOC_036069Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00057256TCONS_00057256Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000210BTB/POZ_dom
IPR003131T1-type_BTB
IPR011333SKP1/BTB/POZ
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: Biological Process
TermDefinition
GO:0051260protein homooligomerization
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0051260 protein homooligomerization
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000210BTB/POZ domainSMARTSM00225BTB_4coord: 60..161
e-value: 1.4E-14
score: 64.4
IPR000210BTB/POZ domainPROSITEPS50097BTBcoord: 60..129
score: 9.248
IPR003131Potassium channel tetramerisation-type BTB domainPFAMPF02214BTB_2coord: 62..150
e-value: 6.0E-20
score: 71.3
NoneNo IPR availableGENE3D3.30.710.10coord: 51..169
e-value: 2.2E-27
score: 94.8
coord: 15..50
e-value: 0.0012
score: 18.1
IPR011333SKP1/BTB/POZ domainSUPERFAMILY54695POZ domaincoord: 60..158

Blast
[Close]
BLAST of TCONS_00057256-protein vs. Swiss-Prot (Human)
Match: BACD3 (BTB/POZ domain-containing adapter for CUL3-mediated RhoA degradation protein 3 OS=Homo sapiens GN=KCTD10 PE=1 SV=1)

HSP 1 Score: 357.066 bits (915), Expect = 2.202e-123
Identity = 171/282 (60.64%), Postives = 217/282 (76.95%), Query Frame = 0 
Query:   34 GGSLFYTTLGTLTKRXKDQKTSAVPTKYVKLNVGGSLFYTTLGTLTKRADSMLRAMFSGRMEVLTDTEGWVLIDRSGKHFGTILNYLRDGEVPMPDSKAELKEFLAETKFYCLQALSAEVEEALRKKGEDIEPKCQVPLVTSQAEDRTLIMNTEKPVIKLVCNRYNNKYSYTSQSDENILKNLELFDKLCIRFNGRILFLKDIIANDEICCWMFYGNGKKVTEVCCTSIVYATERKHTKVEFPEARIYEDTLNILLFEGRGETAFDNELFRAT-KVSKPSHH 314
            G S+  + +     R    K ++  +KYVKLNVGG+L+YTT+ TLTK+ D+ML+AMFSGRMEVLTD+EGW+LIDR GKHFGTILNYLRDG VP+P+S+ E++E LAE K+Y +Q L  E + AL+ K +  EP C+VP++TS  E++ LI  + KP +KL+ NR NNKYSYTS SD+N+LKN+ELFDKL +RFNGR+LF+KD+I  DEICCW FYG G+K+ EVCCTSIVYATE+K TKVEFPEARIYE+TLNILL+E +     DN L  AT   +  SHH
Sbjct:    6 GESVVSSAVPAAATRTTSFKGTSPSSKYVKLNVGGALYYTTMQTLTKQ-DTMLKAMFSGRMEVLTDSEGWILIDRCGKHFGTILNYLRDGAVPLPESRREIEELLAEAKYYLVQGLVEECQAALQNK-DTYEPFCKVPVITSSKEEQKLIATSNKPAVKLLYNRSNNKYSYTSNSDDNMLKNIELFDKLSLRFNGRVLFIKDVIG-DEICCWSFYGQGRKIAEVCCTSIVYATEKKQTKVEFPEARIYEETLNILLYEAQDGRGPDNALLEATGGAAGRSHH 284
The following BLAST results are available for this feature:
BLAST of TCONS_00057256-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
BACD32.202e-12360.64BTB/POZ domain-containing adapter for CUL3-mediate... [more]
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