TCONS_00057328-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00057328-protein
Unique Name	TCONS_00057328-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	484

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00057328-protein ID=TCONS_00057328-protein|Name=TCONS_00057328-protein|organism=Clytia hemisphaerica|type=polypeptide|length=484bp
FTLKTKYLCVMELKNENDEEESLLSQQDNHDGGNINKINTVIEKLGIGRF
SYWLISRLSTVYFTYGAEMTMLGIIAPFFKCEWNLTGFELGFMTSTNLIG
QGVGFVFWGWMGDKFGRKPVLLTSLFIAMLFSFLTVFSTGYLLFALFRGI
VGIGIASFLFPACLLSEYLPTRIRGIGILASMISYSLGSIFVAWIAKIFL
LQNKWRLFFIVVSAPIVIALAASITLPESIRFLANKSKIDKLRTILQHIA
KAHHKELSNEDIDNIRPLQGQQTDENFRMIFRKDRLPKLLAVIVTLSACL
LNFYGFIIWNTDLQQRYFSSPQNETSTKCHKLTPADYNQNMIVAVSGLLG
TSSSLILVDLIGRKKPVIISLLAVSLLILSLNFRMSFITFSSIMFLGRGI
ISTGLATTNLILNEVFETSVRAKVGGFAQMIGCCITGLAPFLIQYGSHYS
MMAVTVGISVFCVIGAVACMTLKETKGRPLDEKE

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_036125	XLOC_036125	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00057328	TCONS_00057328	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR005828	MFS_sugar_transport-like
IPR005829	Sugar_transporter_CS
IPR020846	MFS_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0022857	transmembrane transporter activity
GO:0005215	transporter activity

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral component of membrane

Vocabulary: **Biological Process**
Term	Definition
GO:0055085	transmembrane transport

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0055085	transmembrane transport
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0022857	transmembrane transporter activity
molecular_function	GO:0005215	transporter activity

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 10..30
None	No IPR available	GENE3D	1.20.1250.20		coord: 268..484 e-value: 9.1E-22 score: 76.8 coord: 37..262 e-value: 2.5E-29 score: 101.6
IPR005828	Major facilitator, sugar transporter-like	PFAM	PF00083	Sugar_tr	coord: 88..482 e-value: 1.7E-31 score: 109.5
IPR005829	Sugar transporter, conserved site	PROSITE	PS00216	SUGAR_TRANSPORT_1	coord: 354..370
IPR020846	Major facilitator superfamily domain	PROSITE	PS50850	MFS	coord: 54..477 score: 29.37
IPR020846	Major facilitator superfamily domain	CDD	cd06174	MFS	coord: 55..473 e-value: 1.62957E-28 score: 113.563
IPR020846	Major facilitator superfamily domain	SUPERFAMILY	103473	MFS general substrate transporter	coord: 38..483

Blast

[Close]

BLAST of TCONS_00057328-protein vs. Swiss-Prot (Human)
Match: SVOPL (Putative transporter SVOPL OS=Homo sapiens GN=SVOPL PE=2 SV=2)

HSP 1 Score: 149.443 bits (376), Expect = 1.145e-39
Identity = 115/464 (24.78%), Postives = 210/464 (45.26%), Query Frame = 0

Query:   38 INTVIEKLGIGRFSYWLISRLSTVYFTYGAEMTMLGIIAPFFKCEWNLTGFELGFMTSTNLIGQGVGFVFWGWMGDKFGRKPVLLTSLFIAMLFSFLTVFSTGYLLFALFRGIVGIGIASFLFPACLLSEYLPTRIRGIGILASMISYSLGSIFVAWIAKIFLLQNKWRLFFIVVSAPIVIALAASITLPESIRFLANKSKIDKLRTILQHIAKAHHKELSNEDIDNIRPLQGQQTDENFRMIFRKDRLPKLLAVIVTLSACLLNFYGFIIWNTDLQQRYF---------------SSPQNETSTKCHKLTPADYNQNMIVAVSGLLGTSSSLIL-VDLIGRKKPVIISLLAVSLLILSLNFRMSFITFSSIMFLGRGIISTGLATTNLILNEVFETSVRAKVGGFAQMIGCCITG--LAPFLIQYGSHYSMMAVTVGISVFCVIGAVACMTLK-ETKGRPLDE 482
            +   +E +G GRF   L   + +       E+ ++ +++P  +CEW L  +++  +T+    G  V  + +G + D++GR  +LL S      FS LT F+  Y+ F   R +VG G++       + +E+LPT+ RG  +  S + +  GS+ +  +A + +    WR    V S P +I + A   +PES RF  +          L+ +AK +   +    +  + P+  ++    F  +     L   L + V        +YG I+ + +L +R                  S ++++   CH   P+DY + MI++  G +  +   IL ++ +GR+  + I++   +L  L LN   S       +F+ R +++    T  +   EV+ T++RA   G       C  G  +APF+ Q     S++      S  CV+ A++  TL  ETKGR L +
Sbjct:   34 VEDAVETIGFGRFHIALFLIMGSTGVVEAMEIMLIAVVSPVIRCEWQLENWQVALVTTMVFFGYMVFSILFGLLADRYGRWKILLISFLWGAYFSLLTSFAPSYIWFVFLRTMVGCGVSGHSQGLIIKTEFLPTKYRGYMLPLSQVFWLAGSLLIIGLASVIIPTIGWRWLIRVASIPGIILIVAFKFIPESARFNVSTGNTRAALATLERVAKMNRSVMPEGKL--VEPVLEKR--GRFADLLDAKYLRTTLQIWVIWLGISFAYYGVILASAELLERDLVCGSKSDSAVVVTGGDSGESQSPCYCHMFAPSDY-RTMIISTIGEIALNPLNILGINFLGRRLSLSITMGCTALFFLLLNICTSSAGLIGFLFMLRALVAANFNTVYIYTAEVYPTTMRAL--GMGTSGSLCRIGAMVAPFISQVLMSASILGALCLFSSVCVVCAISAFTLPIETKGRALQQ 490

The following BLAST results are available for this feature:

BLAST of TCONS_00057328-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00057328-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
SVOPL	1.145e-39	24.78	Putative transporter SVOPL OS=Homo sapiens GN=SVOP...	[more]

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TCONS_00057328-protein (polypeptide) - C. hemisphaerica