TCONS_00057340-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00057340-protein
Unique NameTCONS_00057340-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length459

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00057340-protein ID=TCONS_00057340-protein|Name=TCONS_00057340-protein|organism=Clytia hemisphaerica|type=polypeptide|length=459bp
MISNQMKCFVFRGLIKSVYTMNKLKSFFEKKKLDNKFKQAGSGHTLSESR
SQDAGSSRAQLPTQRQIPSSGASRAGEAALARLQQQHGQPKKPSSSTATW
KHKSEAEKMKQEMLASDNATVPIKKPATIVKDHSLAVDGLFYTCPVYPAC
LPWGEIHDHLRQCLLRELPDEPLMISVTMIHTLNRDKVKKEACITILTKY
IQNILDHPGEEKYRKIRKGNKVFQEKVQPIIGVEEFLTKGAGFQLQTVDN
SEAGTSEEFYVMSEEIASNIEQIQIAKEMLAQAEGLEIILDRNLKVFTAS
SKASQMKVPDSFFNVSSDEVKQTQMDITNTVEKSKELRTKAMRDADNGPK
RIYRYCIIRVRFPDGLIIQGTFKASEKLSDVKNFVRENLALDWLPFDVVD
TIGKPFSKETESLSSLKLTPAALLNFRIDQNVMNEIAASSQGGQVRFLKG
DVMILLQEL
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_036133XLOC_036133Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00057340TCONS_00057340Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001012UBX_dom
IPR018997PUB_domain
IPR029071Ubiquitin-rel_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001012UBX domainSMARTSM00166ubx_3coord: 348..427
e-value: 7.6E-4
score: 27.7
IPR001012UBX domainPFAMPF00789UBXcoord: 355..422
e-value: 2.3E-7
score: 30.8
IPR001012UBX domainPROSITEPS50033UBXcoord: 356..426
score: 11.368
IPR018997PUB domainSMARTSM00580PGNneucoord: 192..264
e-value: 8.9E-10
score: 48.5
IPR018997PUB domainPFAMPF09409PUBcoord: 189..273
e-value: 6.4E-22
score: 77.2
IPR018997PUB domainSUPERFAMILY143503PUG domain-likecoord: 172..288
NoneNo IPR availableGENE3D3.10.20.90coord: 28..426
e-value: 1.2E-18
score: 66.8
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 38..108
NoneNo IPR availableCDDcd10460PUB_UBXD1coord: 177..280
e-value: 6.9395E-37
score: 130.446
IPR029071Ubiquitin-related domainSUPERFAMILY54236Ubiquitin-likecoord: 352..426

Blast
[Close]
BLAST of TCONS_00057340-protein vs. Swiss-Prot (Human)
Match: UBXN6 (UBX domain-containing protein 6 OS=Homo sapiens GN=UBXN6 PE=1 SV=1)

HSP 1 Score: 239.965 bits (611), Expect = 2.471e-74
Identity = 156/426 (36.62%), Postives = 238/426 (55.87%), Query Frame = 0 
Query:   24 LKSFFEKKKLDNKFKQAGSGHTLSESRSQDAGSSRAQLPTQR---QIPSSGASRAGEAALARLQQQHGQPKKPSSSTATWKHKSEAEKMKQEMLASDNATVP----IKKPATIVKDHSLAVDGLFYTCPVYPACLPWGEIHDHLRQCLLRELPDEPLMISVTMIHTLNRDKVKKEACITILTKYIQNILDHPGEEKYRKIRKGNKVFQEKVQPIIGVEEFLTKGAGFQLQTVDNSEAGTSEEFYVMSEEIASNIEQIQIAKEMLAQAEGLEIILDRNLKVFTASSKASQMKVPDSFFNVSSDEVKQTQMDITNTVEKSKELRTKAMRDADNGPK-RIYRYCIIRVRFPDGLIIQGTFKASEKLSDVKNFVRENLALDWLPFDVVDTIGKPFSK-ETESLSSLKLTPAALLNFRIDQNVMNEIAASS 440
            +K FF++ K D KFK AG G  L ES  + A   +   P  R   Q P++ A  A  AALARL+Q+  +   P+S   T +++   E ++ E   S +   P    + +P      H LAV G+++TCP+  A L   +    +++ +L     +P+  S+  I+T N+D+ + +  +  + KY+ NI  HP EEKYRKI+  NKVFQE++  + G  EF  +  GFQ   +   +    EEFYV+SE   +  + ++  KE L  AE +   LDR  +VF  S  ASQ ++P  FFN++++E+K+ Q   +  VE+   LRTKAMR+ +     R Y Y ++RVR PDG ++QGTF A E+L  V  FVRE L  DWLPF+++ + G+  S+ E  +L+   L P+ALL F  D  V+ +I A+ 
Sbjct:    1 MKKFFQEFKADIKFKSAGPGQKLKESVGEKAHKEKPNQPAPRPPRQGPTNEAQMAAAAALARLEQKQSRAWGPTSQD-TIRNQVRKE-LQAEATVSGSPEAPGTNVVSEPREEGSAH-LAVPGVYFTCPLTGATLRKDQRDACIKEAILLHFSTDPVAASIMKIYTFNKDQDRVKLGVDTIAKYLDNIHLHPEEEKYRKIKLQNKVFQERINCLEGTHEFF-EAIGFQKVLLPAQDQEDPEEFYVLSETTLAQPQSLERHKEQLLAAEPVRAKLDRQRRVFQPSPLASQFELPGDFFNLTAEEIKREQRLRSEAVERLSVLRTKAMREKEEQRGLRKYNYTLLRVRLPDGCLLQGTFYARERLGAVYGFVREALQSDWLPFELLASGGQKLSEDENLALNECGLVPSALLTFSWDMAVLEDIKAAG 422
The following BLAST results are available for this feature:
BLAST of TCONS_00057340-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
UBXN62.471e-7436.62UBX domain-containing protein 6 OS=Homo sapiens GN... [more]
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