TCONS_00058009-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00058009-protein
Unique NameTCONS_00058009-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length107

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00058009-protein ID=TCONS_00058009-protein|Name=TCONS_00058009-protein|organism=Clytia hemisphaerica|type=polypeptide|length=107bp
MSLVLPEKFQHILRVMNTNIDGKTKIMYAMTSIKGVGRRFSNICLKKADI
DMNKRAGELSDEEVERLITIMQNPRQYKIPDYFLNRKKDIKDGKYSQVSI
FNATLIS
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_036565XLOC_036565Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00058009TCONS_00058009Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001892Ribosomal_S13
IPR010979Ribosomal_S13-like_H2TH
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
GO:0003735structural constituent of ribosome
GO:0003676nucleic acid binding
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
GO:0005622intracellular
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0005622 intracellular
cellular_component GO:0005840 ribosome
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0003723 RNA binding
molecular_function GO:0003735 structural constituent of ribosome
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
ZOOM
x 1
POSITION
0
MSLVLPEKFQHILRVMNTNIDGKTKIMYAMTSIKGVGRRFSNICLKKADIDMNKRAGELSDEEVERLITIMQNPRQYKIPDYFLNRKKDIKDGKYSQVSIFNATLIS102030405060708090100Expect = 3.5E-39 / Score = 132.3Expect = 8.1E-17 / Score = 59.4Expect = 1.9E-29 / Score = 102.5Score = 16.768Score = SequenceG3DSA:1.10.8.50PIRSF002134PF00416PS50159SSF46946
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.10.8.50coord: 1..80
e-value: 3.5E-39
score: 132.3
IPR001892Ribosomal protein S13PIRSFPIRSF002134RPS13p_RPS13a_RPS18e_RPS13ocoord: 5..98
e-value: 8.1E-17
score: 59.4
IPR001892Ribosomal protein S13PFAMPF00416Ribosomal_S13coord: 14..98
e-value: 1.9E-29
score: 102.5
IPR001892Ribosomal protein S13PROSITEPS50159RIBOSOMAL_S13_2coord: 15..91
score: 16.768
IPR010979Ribosomal protein S13-like, H2THSUPERFAMILY46946S13-like H2TH domaincoord: 13..77

Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00058009-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
ZOOM
x 1
POSITION
0
MSLVLPEKFQHILRVMNTNIDGKTKIMYAMTSIKGVGRRFSNICLKKADIDMNKRAGELSDEEVERLITIMQNPRQYKIPDYFLNRKKDIKDGKYSQVSIFNATLIS102030405060708090100Expect = 6.11e-57 / Id = 76.53SequenceRS18
Match NameE-valueIdentityDescription
RS186.107e-5776.5340S ribosomal protein S18 OS=Homo sapiens GN=RPS18... [more]
back to top