TCONS_00058071-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00058071-protein
Unique NameTCONS_00058071-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length205

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00058071-protein ID=TCONS_00058071-protein|Name=TCONS_00058071-protein|organism=Clytia hemisphaerica|type=polypeptide|length=205bp
MLRRSTMAVARGIISYHSAGGRSIGSPQLTLTAPMTPTKQYLHQFSLHTS
SFSPKTTNGKESSLSNVIDLVEGKCVSKELEEKPERLLQKQQSTEEEEFL
TLNEDEIEEKFIRGSGPGGQKINKTSSCVELKHIKTGIIVKCQESRSQDQ
NRKIARSRMLEKLKQMFAPILSDANKKKEKQKKRKIETERKRKLKEDAMK
NRVEL
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_036595XLOC_036595Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00058071TCONS_00058071Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000352Pep_chain_release_fac_I_II
Vocabulary: Biological Process
TermDefinition
GO:0006415translational termination
Vocabulary: Molecular Function
TermDefinition
GO:0003747translation release factor activity
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006415 translational termination
molecular_function GO:0003747 translation release factor activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 171..197
NoneNo IPR availableGENE3D3.30.160.20coord: 93..203
e-value: 1.2E-30
score: 105.3
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 171..205
NoneNo IPR availableSUPERFAMILY75620Release factorcoord: 96..190
IPR000352Peptide chain release factor class I/class IIPFAMPF00472RF-1coord: 99..196
e-value: 2.8E-26
score: 91.7

Blast
[Close]
BLAST of TCONS_00058071-protein vs. Swiss-Prot (Human)
Match: CL065 (Probable peptide chain release factor C12orf65, mitochondrial OS=Homo sapiens GN=C12orf65 PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 4.117e-24
Identity = 39/69 (56.52%), Postives = 55/69 (79.71%), Query Frame = 0 
Query:   99 FLTLNEDEIEEKFIRGSGPGGQKINKTSSCVELKHIKTGIIVKCQESRSQDQNRKIARSRMLEKLKQMF 167
             L+L+E+E+EE+F++G GPGGQ  NKTS+CV LKHI +GI+VKC ++RS DQNRK+AR  + EK+   +
Sbjct:   52 LLSLDENELEEQFVKGHGPGGQATNKTSNCVVLKHIPSGIVVKCHQTRSVDQNRKLARKILQEKVDVFY 120
The following BLAST results are available for this feature:
BLAST of TCONS_00058071-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CL0654.117e-2456.52Probable peptide chain release factor C12orf65, mi... [more]
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