TCONS_00058279-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00058279-protein
Unique Name	TCONS_00058279-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	982

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00058279-protein ID=TCONS_00058279-protein|Name=TCONS_00058279-protein|organism=Clytia hemisphaerica|type=polypeptide|length=982bp
LNCARKVRPDLFVIAELFTGDEKTDNIFVNRLGINSMIRENMGAFSPHDL
GRHIHRYGGPPTGSFMLPNKRPLKPSVAPALFMDITHDNESLIEKRSIFD
FLPSCALVAAGSFATGSTRGYDDLVPHYIHVVEENRLYQTWCDQKSDGSI
FLGEGLINARQTLNAIHTDMKANGFEEIFVDQMTNNVVAVTRHCPRNHQS
IIIVGHCCFSRPAEDQYPKIGRKMHGDFPPLKIEGHLEEILFEGQILEKE
TIKEFVRHVDFINGNENVVVYSQKNIQLNSSNLCTLQKTDRGSEILFRNF
FPGSVIIFKVSGKLSARDSINCLRATINTLPDFQDSNSKLLIDGGEGKNS
ITDVKEIVSKLSLVDLNKVLYRSSQEEGDDGFGGGVYNIPGHGDMVYCGL
QGIMSVLCKVAENNDLGHPICSNLREGDWLLGYTANRLKHHERTKPLGLW
FENIFDHMSVLPRFLVPSYFEVILRGVHSLCIERSLSLLSRFVQDGATFT
KHLSMASVQLCGEVKSARLPSVEKINQKELTVTLAAGLPHFSTGFMRCWG
RDTFIALRGLMLITGRFDVARTLILAYAGCVRHGLAPNLLASGTSARFNA
RDATWFWLQAVQEYCKMADEGVGLLDATVLRMYPTDDSEPLINNPKKEPL
HQTIHEILTRHYNGISFKERNAGIQLDRDMSDQGFFVEVSVDELGFVRGG
SEHNCGSWMDKMGGSEIAKNKGVPATPRCGSPVEIIGLCKSTLRWLVQLH
GEGKYPHNTISFTSKQGDTKTVSYADWESKIQDNFDRNFFIGDDSTFPNI
HKRNIYKDTLGSNHDYLDHQLRPNYPIAMCVAPEMFNAQHAWKALESIER
HLLGPLGLRTLDPDDWNYDGDYENHLDNADPKKAKGFNYHNGPEWVWVFG
PFLRARLIMAERIDKTNLLPQTISKTRQVLSRHKREIETSPWKGLTELTN
KDGAFCSHSCPTQAWSSACLLEVLYDLHAMID

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_036711	XLOC_036711	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00058279	TCONS_00058279	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR032788	AGL_central
IPR032790	GDE_C
IPR008928	6-hairpin_glycosidase-like
IPR017853	Glycoside_hydrolase_SF

Vocabulary: **Molecular Function**
Term	Definition
GO:0003824	catalytic activity

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003824	catalytic activity

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	1.50.10.10		coord: 516..975 e-value: 3.9E-45 score: 154.4
None	No IPR available	GENE3D	3.20.20.80		coord: 1..235 e-value: 1.4E-9 score: 37.0
IPR032788	Glycogen debranching enzyme, central domain	PFAM	PF14702	hGDE_central	coord: 155..438 e-value: 3.5E-72 score: 243.0
IPR032790	Glycogen debranching enzyme, C-terminal	PFAM	PF06202	GDE_C	coord: 506..972 e-value: 6.1E-119 score: 397.3
IPR008928	Six-hairpin glycosidase-like	SUPERFAMILY	48208	Six-hairpin glycosidases	coord: 701..978 coord: 537..640
IPR017853	Glycoside hydrolase superfamily	SUPERFAMILY	51445	(Trans)glycosidases	coord: 4..195

Blast

[Close]

BLAST of TCONS_00058279-protein vs. Swiss-Prot (Human)
Match: GDE (Glycogen debranching enzyme OS=Homo sapiens GN=AGL PE=1 SV=3)

HSP 1 Score: 931.013 bits (2405), Expect = 0.000e+0
Identity = 474/1008 (47.02%), Postives = 651/1008 (64.58%), Query Frame = 0

Query:    1 LNCARKVRPDLFVIAELFTGDEKTDNIFVNRLGINSMIRENMGAFSPHDLGRHIHRYGGPPTGSFMLPNKRPLKPSVAPALFMDITHDNESLIEKRSIFDFLPSCALVAAGSFATGSTRGYDDLVPHYIHVVEENRLYQTWCDQ---KSDGSIFLGEGLINARQTLNAIHTDMKANGFEEIFVDQMTNNVVAVTRHCPRNHQSIIIVGHCCFSRPAEDQYPKIGRKMHGDFPPLKIEGHLEEILFEGQILEKETIKEFVRHVDFINGNENVVVYSQKNIQLNSSNL------CTLQKTDRGSEILFRNFFPGSVIIFKVSGKLSARDSINCLRATINTL-PDFQDSNSKLLIDGGEGKNSITDVKEIVSKLSLVDLNKVLYRSSQEEGDDGFGGGVYNIPGHGDMVYCGLQGIMSVLCKVAENNDLGHPICSNLREGDWLLGYTANRLKHHERT-KPLGLWFENIFDHMSVLPRFLVPSYFEVILRGVHSLCIERSLSLLSRFVQDGATFTKHLSMASVQLCGEVKSARLPSVE--------KINQ-----KELTVTLAAGLPHFSTGFMRCWGRDTFIALRGLMLITGRFDVARTLILAYAGCVRHGLAPNLLASGTSARFNARDATWFWLQAVQEYCKMADEGVGLLDATVLRMYPTDDSEPLINNPKKEPLHQTIHEILTRHYNGISFKERNAGIQLDRDMSDQGFFVEVSVD-ELGFVRGGSEHNCGSWMDKMGGSEIAKNKGVPATPRCGSPVEIIGLCKSTLRWLVQLHGEGKYPHNTISFTSKQGDTKTVSYADWESKIQDNFDRNFFIGDDST-----FPN-IHKRNIYKDTLGSNHDYLDHQLRPNYPIAMCVAPEMFNAQHAWKALESIERHLLGPLGLRTLDPDDWNYDGDYENHLDNADPKKAKGFNYHNGPEWVWVFGPFLRARLIMAERIDKTNLLPQTISKTRQVLSRHKREIETSPWKGLTELTNKDGAFCSHSCPTQAWSSACLLEVLYDL 977
            L+ AR ++P+L+V+AELFTG E  DN+FV RLGI+S+IRE M A++ H+ GR ++RYGG P GSF+ P  RPL P++A ALFMDITHDNE  I  RS +D LPS  +V+    A+GSTRGYD+LVPH I VV E R Y  W  +    + G +    G+I AR  ++ +H ++ A GF +++VDQ+  ++VAVTRH P  HQS++ V    F  P    Y K       + P + I G +EE++ E + +E+ T K + +  + ING  ++ V  +++IQLN S +       T    +   EI F N  PGSVIIF+VS    A+ ++  LR  +    P F+  +  L +D  +    I     + S+L+L +LN++LYR   EE +DG  GG Y+IP    + Y GLQG+MSVL ++   NDLGHP C+NLR GDW++ Y +NRL     T   +G W + +F ++  +PR+L+P YF+ IL G ++  ++ +   +S FVQ+G+TF KHLS+ SVQLCG  K   LP +         ++N+     ++  V+LAAGLPHFS+G  RCWGRDTFIALRG++LITGR+  AR +ILA+AG +RHGL PNLL  G  AR+N RDA W+WLQ +Q+YCKM   G+ +L   V RMYPTDDS PL      +PL + I E + +H  GI F+ERNAG Q+DR+M D+GF +   VD E GFV GG+  NCG+WMDKMG S+ A+N+G+PATPR GS VEI+GL KS +RWL++L  +  +P++ ++   + G    VSY +W  KIQDNF++ F + +D +      PN +HKR IYKD+ G++  + D+QLRPN+ IAM VAPE+F  + AWKALE  E+ LLGPLG++TLDPDD  Y G Y+N LDN +   AKGFNYH GPEW+W  G FLRA+L  + R+       +TI   + VLSRH   +E SPWKGL ELTN++  +C  SC TQAWS A +LE LYDL
Sbjct:  540 LDAARNLQPNLYVVAELFTGSEDLDNVFVTRLGISSLIREAMSAYNSHEEGRLVYRYGGEPVGSFVQPCLRPLMPAIAHALFMDITHDNECPIVHRSAYDALPSTTIVSMACCASGSTRGYDELVPHQISVVSEERFYTKWNPEALPSNTGEVNFQSGIIAARCAISKLHQELGAKGFIQVYVDQVDEDIVAVTRHSPSIHQSVVAVSRTAFRNPKTSFYSK-------EVPQMCIPGKIEEVVLEARTIERNT-KPYRKDENSINGTPDITVEIREHIQLNESKIVKQAGVATKGPNEYIQEIEFENLSPGSVIIFRVSLDPHAQVAVGILRNHLTQFSPHFKSGS--LAVDNADPILKIP-FASLASRLTLAELNQILYRCESEEKEDG--GGCYDIPNWSALKYAGLQGLMSVLAEIRPKNDLGHPFCNNLRSGDWMIDYVSNRLISRSGTIAEVGKWLQAMFFYLKQIPRYLIPCYFDAILIGAYTTLLDTAWKQMSSFVQNGSTFVKHLSLGSVQLCGVGKFPSLPILSPALMDVPYRLNEITKEKEQCCVSLAAGLPHFSSGIFRCWGRDTFIALRGILLITGRYVEARNIILAFAGTLRHGLIPNLLGEGIYARYNCRDAVWWWLQCIQDYCKMVPNGLDILKCPVSRMYPTDDSAPLPAGTLDQPLFEVIQEAMQKHMQGIQFRERNAGPQIDRNMKDEGFNITAGVDEETGFVYGGNRFNCGTWMDKMGESDRARNRGIPATPRDGSAVEIVGLSKSAVRWLLELSKKNIFPYHEVT-VKRHGKAIKVSYDEWNRKIQDNFEKLFHVSEDPSDLNEKHPNLVHKRGIYKDSYGASSPWCDYQLRPNFTIAMVVAPELFTTEKAWKALEIAEKKLLGPLGMKTLDPDDMVYCGIYDNALDNDNYNLAKGFNYHQGPEWLWPIGYFLRAKLYFS-RLMGPETTAKTIVLVKNVLSRHYVHLERSPWKGLPELTNENAQYCPFSCETQAWSIATILETLYDL 1532

The following BLAST results are available for this feature:

BLAST of TCONS_00058279-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00058279-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
GDE	0.000e+0	47.02	Glycogen debranching enzyme OS=Homo sapiens GN=AGL...	[more]

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TCONS_00058279-protein (polypeptide) - C. hemisphaerica