TCONS_00058281-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00058281-protein
Unique Name	TCONS_00058281-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	305

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00058281-protein ID=TCONS_00058281-protein|Name=TCONS_00058281-protein|organism=Clytia hemisphaerica|type=polypeptide|length=305bp
MGFLNIQTLQLVNDEDISCNVYIVKKGWTLHFLLDPVLDSKVTTFYCNHP
VSASEEYNHETFHNYQWTSHHNDILFPDSYAQVEIKRAGVFKFYLESENK
ERCCNGFFIVQPDLYFDSGNVMDIQSVTMQTVLTKCLGKFAGWKGRLQVA
RECNYNTIHFTPIQELGESDSSYSIRDHHGLDPRYGNDFTESNLEAFVLN
LHKSWNMFSIVDVVWNHVANDCKWITEHPEASYNLVNTPHLRPAFLVDRL
LWYFNKEIIDNQWKDEGLPNFISEQSHLESLEKILRKKLLDLRLEEFYMV
DIKED

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_036713	XLOC_036713	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00058281	TCONS_00058281	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR029436	AGL_euk_N
IPR032792	AGL_glucanoTrfase
IPR017853	Glycoside_hydrolase_SF

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR029436	Eukaryotic glycogen debranching enzyme, N-terminal domain	PFAM	PF14699	hGDE_N	coord: 30..115 e-value: 1.1E-11 score: 44.6
None	No IPR available	GENE3D	3.20.20.80		coord: 76..291 e-value: 1.4E-28 score: 99.5
IPR032792	Glycogen debranching enzyme, glucanotransferase domain	PFAM	PF14701	hDGE_amylase	coord: 122..304 e-value: 3.9E-60 score: 204.1
IPR017853	Glycoside hydrolase superfamily	SUPERFAMILY	51445	(Trans)glycosidases	coord: 138..257

Blast

[Close]

BLAST of TCONS_00058281-protein vs. Swiss-Prot (Human)
Match: GDE (Glycogen debranching enzyme OS=Homo sapiens GN=AGL PE=1 SV=3)

HSP 1 Score: 220.705 bits (561), Expect = 6.940e-65
Identity = 115/304 (37.83%), Postives = 180/304 (59.21%), Query Frame = 0

Query:    6 IQTLQLVNDEDISCNVYIVKKGWTLHFLLDPVLDSKVTTFYCNHPVSASEEYNHETFHNYQWTSHHNDILFPDSYAQVEIKRAGVFKFYLESENKERCCNGFFIVQPDLYFDSGN-VMDIQSVTMQTVLTKCLGKFAGWKGRLQVARECNYNTIHFTPIQELGESDSSYSIRDHHGLDP---RYGNDFTESNLEAFVLNLHKSWNMFSIVDVVWNHVANDCKWITEHPEASYNLVNTPHLRPAFLVDRLLWYFNKEIIDNQWKDEGLPNFISEQSHLESLEKILRKKLL-DLRLEEFYMVDIKE 304
            I+ L L   E +   ++ +++G+ L F L P L  K  T Y N+P    E +N E F +  W +        D Y ++ ++++G F++Y    N E+   G+ +V P L   + N V+ +  VT+QT L KCLG F  W+ RL+VA+E  YN IHFTP+Q LG S S YS+ +   L+P   R    +T +++   V  L K WN+  I DVV+NH A + KWI EHPE +YNLVN+PHL+PA+++DR LW F+ ++ + ++K++G+P  I    H+ S+ KI+ + +   L+L EF+ VD+ +
Sbjct:    7 IRILLLNEMEKLEKTLFRLEQGYELQFRLGPTLQGKAVTVYTNYPFPG-ETFNREKFRSLDWENPTEREDDSDKYCKLNLQQSGSFQYYFLQGN-EKSGGGYIVVDPILRVGADNHVLPLDCVTLQTFLAKCLGPFDEWESRLRVAKESGYNMIHFTPLQTLGLSRSCYSLANQLELNPDFSRPNRKYTWNDVGQLVEKLKKEWNVICITDVVYNHTAANSKWIQEHPECAYNLVNSPHLKPAWVLDRALWRFSCDVAEGKYKEKGIPALIENDHHMNSIRKIIWEDIFPKLKLWEFFQVDVNK 308

The following BLAST results are available for this feature:

BLAST of TCONS_00058281-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00058281-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
GDE	6.940e-65	37.83	Glycogen debranching enzyme OS=Homo sapiens GN=AGL...	[more]

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TCONS_00058281-protein (polypeptide) - C. hemisphaerica