TCONS_00058341-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00058341-protein
Unique Name	TCONS_00058341-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	463

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00058341-protein ID=TCONS_00058341-protein|Name=TCONS_00058341-protein|organism=Clytia hemisphaerica|type=polypeptide|length=463bp
MNLFTGASSKHNVMSIWVITILIQPVVTVNNTSRSKSPTTFIYHGSGNIS
SSLPHNRRRSGLASTIVSPGKNQMENLSHKAEWWTGNETAPTAHVENLLE
YCSLFKQPLEDCNCTWYRALKPKGNLNFCRDQDQLLTCTLARRITNRAII
GISTIGIFGNLLVLVVTGYHRHRITVCRRIIGMLAFSDLLFSLVQLVIYF
PAFWTCLWIYETIMCKILRFAVHAFCMISLGFVMIIAFERFNGIVKPFQI
RVSNKKIYLTTILNIVWAITFSIPLIIHLDVIHGGECTKNWSDPHQALIY
DMVLVIGTFLFPIIVTSVLYILIVKSLYQVKSETGSIIGKQQKHRRRRED
RRITSIIAYLLVSFVILVAPNRLLNLLHGYGVFDDLAQETYSYLQLAAML
PYAIHASINPLIYSIIDRKFRKNVRMLFYKVTNQEKKAFSIVNSEKHLLG
APHNRESSIISDV

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_036750	XLOC_036750	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00058341	TCONS_00058341	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000276	GPCR_Rhodpsn
IPR017452	GPCR_Rhodpsn_7TM

Vocabulary: **Biological Process**
Term	Definition
GO:0007186	G-protein coupled receptor signaling pathway

Vocabulary: **Molecular Function**
Term	Definition
GO:0004930	G-protein coupled receptor activity

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral component of membrane

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007186	G-protein coupled receptor signaling pathway
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0004930	G-protein coupled receptor activity

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000276	G protein-coupled receptor, rhodopsin-like	PRINTS	PR00237	GPCRRHODOPSN	coord: 353..377 score: 19.35 coord: 222..244 score: 20.77 coord: 177..198 score: 27.72 coord: 395..421 score: 24.88 coord: 144..168 score: 23.71 coord: 301..324 score: 23.5
IPR000276	G protein-coupled receptor, rhodopsin-like	PFAM	PF00001	7tm_1	coord: 159..413 e-value: 9.0E-33 score: 113.5
IPR000276	G protein-coupled receptor, rhodopsin-like	PROSITE	PS00237	G_PROTEIN_RECEP_F1_1	coord: 228..244
None	No IPR available	GENE3D	1.20.1070.10		coord: 125..458 e-value: 1.9E-49 score: 167.8
None	No IPR available	SUPERFAMILY	81321	Family A G protein-coupled receptor-like	coord: 111..437
IPR017452	GPCR, rhodopsin-like, 7TM	PROSITE	PS50262	G_PROTEIN_RECEP_F1_2	coord: 159..413 score: 30.281

Blast

[Close]

BLAST of TCONS_00058341-protein vs. Swiss-Prot (Human)
Match: GHSR (Growth hormone secretagogue receptor type 1 OS=Homo sapiens GN=GHSR PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.804e-18
Identity = 79/335 (23.58%), Postives = 157/335 (46.87%), Query Frame = 0

Query:  124 GNLNFCRDQDQLLTCTLARRITNRAIIGISTIGIFGNLLVLVVTGYHRHRITVCRRIIGMLAFSDLL------FSLVQLVIYFPAFWTCLWIYETIMCKILRFAVHAFCMISLGFVMIIAFERFNGIVKPFQIRVSNKKIYLTTILNIVWAITF--SIPLIIHLDVIH--------GGECTKNWSDPHQALIYDMVLVIGTFLF-PIIVTSVLYILIVKSLYQVKSETGSIIGKQQKHRRRREDRRITSIIAYLLVSFVILVAPNRLLNLLHGYGVFD----DLAQETYSYLQLAAMLPYAIHASINPLIYSIIDRKFRKNV-RMLFYKVTNQEK 436
            GN +   +  QL    L   +T    + +  +GI GNLL ++V    R   T     +  +AFSDLL        LV+L  Y P      W +  ++CK+ +F   +    ++  +  ++ ER+  I  P + +V   K  +  ++ ++WA+ F  + P+ + + V H          EC          L+  MV V   F F P+   +VLY LI + L++ +    +++G   + +  ++  ++ +++ +   +F++   P  +   L     F+    ++AQ +  Y  L + + + + A+INP++Y+I+ +K+R  V R+L ++  +Q K
Sbjct:   26 GNDSLGDELLQLFPAPLLAGVTA-TCVALFVVGIAGNLLTMLVVSRFRELRTTTNLYLSSMAFSDLLIFLCMPLDLVRLWQYRP------WNFGDLLCKLFQFVSESCTYATVLTITALSVERYFAICFPLRAKVVVTKGRVKLVIFVIWAVAFCSAGPIFVLVGVEHENGTDPWDTNECRPTEFAVRSGLLTVMVWVSSIFFFLPVFCLTVLYSLIGRKLWR-RRRGDAVVGASLRDQNHKQTVKMLAVVVF---AFILCWLPFHVGRYLFSKS-FEPGSLEIAQIS-QYCNLVSFVLFYLSAAINPILYNIMSKKYRVAVFRLLGFEPFSQRK 347

The following BLAST results are available for this feature:

BLAST of TCONS_00058341-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00058341-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
GHSR	3.804e-18	23.58	Growth hormone secretagogue receptor type 1 OS=Hom...	[more]

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TCONS_00058341-protein (polypeptide) - C. hemisphaerica