TCONS_00058472-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00058472-protein
Unique NameTCONS_00058472-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length554

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00058472-protein ID=TCONS_00058472-protein|Name=TCONS_00058472-protein|organism=Clytia hemisphaerica|type=polypeptide|length=554bp
MPQTEPIKAKGNSKDKNENGSTSSSDLMSSILSHMERSNRENLFSASSEA
EPVNQKPPTHDIKSPTHDIKSPTHDIKSPTHDIKSPTPEAPPRLSKLQGR
SSPATSTTQSSVSSNPPKSPPPPVPSSASSVFSEDPFTNKDQYKADPTPP
PPPQRPSTLTISQNPPNSTSSTISYMPDSGDSETEESGYYSMNNPNTSDN
YNASYQNVNGNIDTESFKLPAPPAKSNLKKSKADKKRKVGFRDGDIQEVV
YTYGPIEYDRANADIDPLTSSAEWELEKRVDSMDIFSVDLHKDEKGLGLS
IIGLGVGTQKGFEKLGIFVKTLTEGGASQKDGRIQVNDQILEVNGVSLVG
VTQYFAAQTLKGANGIVRFLMGREKNKRTQYAPGAPMLDNPDMKKHIDEM
NQAMAQVEEYQTRTLEAEHTLEEVKMELLKAEERAHDAEYNLSETKEMLK
AATESPFVNSQRKLKNEIKKGSKRSGDKVDDLQRSLKEMTNRLSTSEENL
LDLTSKFDVKDKELLEFQEMLEAKHEEERQLSEQNQSISQELGNKSKELE
ALEQ
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_036844XLOC_036844Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00058472TCONS_00058472Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001478PDZ
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 479..506
NoneNo IPR availableCOILSCoilCoilcoord: 393..448
NoneNo IPR availableCOILSCoilCoilcoord: 517..554
NoneNo IPR availableGENE3D2.30.42.10coord: 268..378
e-value: 6.7E-18
score: 64.1
NoneNo IPR availableGENE3D1.10.287.620coord: 387..554
e-value: 1.2E-4
score: 21.0
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..202
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 453..481
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 524..554
NoneNo IPR availableCDDcd00992PDZ_signalingcoord: 285..370
e-value: 1.63246E-14
score: 68.3622
IPR001478PDZ domainSMARTSM00228pdz_newcoord: 295..375
e-value: 2.2E-16
score: 70.4
IPR001478PDZ domainPFAMPF00595PDZcoord: 290..368
e-value: 4.0E-13
score: 49.4
IPR001478PDZ domainPROSITEPS50106PDZcoord: 287..375
score: 18.817
IPR001478PDZ domainSUPERFAMILY50156PDZ domain-likecoord: 270..377

Blast
[Close]
BLAST of TCONS_00058472-protein vs. Swiss-Prot (Human)
Match: NEB1 (Neurabin-1 OS=Homo sapiens GN=PPP1R9A PE=1 SV=2)

HSP 1 Score: 187.193 bits (474), Expect = 1.566e-50
Identity = 86/139 (61.87%), Postives = 110/139 (79.14%), Query Frame = 0 
Query:  237 RKVGFRDGDIQEVVYTYGPIEYDRANADIDPLTSSAEWELEKRVDSMDIFSVDLHKDEKGLGLSIIGLGVGTQKGFEKLGIFVKTLTEGGASQKDGRIQVNDQILEVNGVSLVGVTQYFAAQTLKGANGIVRFLMGREK 375
            RK+ F    I+ V  TY   +YDR N ++DP+ +SAE+ELEKRV+ +++F V+L KDE GLG+SIIG+GVG   G EKLGIFVKT+TEGGA+Q+DGRIQVNDQI+EV+G+SLVGVTQ FAA  L+   G VRF++GREK
Sbjct:  455 RKIKFSSAPIK-VFNTYSNEDYDRRNDEVDPVAASAEYELEKRVEKLELFPVELEKDEDGLGISIIGMGVGADAGLEKLGIFVKTVTEGGAAQRDGRIQVNDQIVEVDGISLVGVTQNFAATVLRNTKGNVRFVIGREK 592
The following BLAST results are available for this feature:
BLAST of TCONS_00058472-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NEB11.566e-5061.87Neurabin-1 OS=Homo sapiens GN=PPP1R9A PE=1 SV=2[more]
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