TCONS_00058551-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00058551-protein
Unique Name	TCONS_00058551-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1093

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00058551-protein ID=TCONS_00058551-protein|Name=TCONS_00058551-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1093bp
MATGFLYGSHGNNTRGKSKKKTLKDYNLYLKETSSQSEDNVETESLISLR
EETSDLSFSGHNKFEDSHVDGYFRPQLRLKSPTRQYPSIVGDEERENDEM
RERRRDIEDDHNVIDGEDSQTQMFSSTDSTTKIIIKETKRRGIKEEQKES
VDGGLLLKKKKNRNEESESEEKDADEKERNEDVLFFSSWSPSSSSCSTSK
TTFTTNKHKEAKRTVRNNTNKRYRTITKNQKKKSELLLKNNHQTEEEEEK
KDVLLQQRRQRKGEKEETGDYLIQTNNISNGKNSLQSSSNRKNISSTVLT
RHHQKPQQTSSKLNNSRSHQKEYSIFSLSSHNNKRKRKSFGGFRRKSMEE
GAATSSNEEENTIMSPQQQTIRADQFNKICPSPFDDVPGFRRSNTMQHRK
SKRDSLNSNSTAAVGRMSKSFSFDLSSSSKVPGPVALGRDKWIQFEEDRG
EENIFQEEEHQISPVSIQSPQKIDFEFFPELTSETDQMILDSHVAEKDVD
SENEVDKLKEQSTGIATRSVENLLETVNKTVTLLKGSITNREISDPDERK
EFVNTDTPDDLSSMISDEIISLEFDTDEEKFRDTPVKQFPDVSLFQVSVV
GTNRDNLRIERKNSVDHVTKDNGSNDVLDEYPPTTQRNSWKLWYRYPDKK
MKMGRRRKWTPVIAHVENNFLKLNSLNGCTPEIKREYPLHPFCSFTAPTM
HKGNKDGKVHSVKLQYVKYKEIRRVKPRLGVEHVPVFTPVVKLSCRDVIA
LRDFMKRIETVIRQIPTYRDEDISYEREEIFIDSEDDCSYLVSGSDGVVI
KYNITVQLKLRCFISGNPELKLFLNDVNNQDILSRTKEALSKENKRTNNW
IVPENYEFNPCIDVKKSQDEGGVVFTPPDGCSFELLRFRLRKRNPLPITV
KSSLEVLALKSVHLKAEVRVNGDGKSIRHKRNNVILYIPVPSSWSKLFLK
SRLVGRIAKYLSVKSSLKSQRVSRASNARASFEISTGCARYEPAYGAIIW
ELGNLPIIRDGLPADATHTFQCTIELPFPLHIRDDFQPYSYLEFNIKQQM
GSNVSVEEVLLSDGRVPEKWVCYRSNFTYRIEMLILEDGKERT

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_036881	XLOC_036881	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00058551	TCONS_00058551	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR001392	Clathrin_mu
IPR028565	MHD
IPR012320	SHD_dom

Vocabulary: **Biological Process**
Term	Definition
GO:0016192	vesicle-mediated transport
GO:0006886	intracellular protein transport
GO:0006897	endocytosis

Vocabulary: **Cellular Component**
Term	Definition
GO:0030131	clathrin adaptor complex

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006897	endocytosis
biological_process	GO:0006886	intracellular protein transport
biological_process	GO:0016192	vesicle-mediated transport
cellular_component	GO:0030131	clathrin adaptor complex

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 157..180
None	No IPR available	COILS	Coil	Coil	coord: 90..110
None	No IPR available	GENE3D	2.60.40.1170		coord: 767..934 e-value: 4.8E-26 score: 90.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 382..413
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 139..366
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..22
IPR001392	Clathrin adaptor, mu subunit	PRINTS	PR00314	CLATHRINADPT	coord: 768..796 score: 30.72 coord: 853..880 score: 31.17 coord: 926..941 score: 35.23
IPR028565	Mu homology domain	PFAM	PF00928	Adap_comp_sub	coord: 768..1079 e-value: 9.1E-39 score: 133.3
IPR028565	Mu homology domain	PROSITE	PS51072	MHD	coord: 777..1084 score: 26.329
IPR028565	Mu homology domain	SUPERFAMILY	49447	Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor	coord: 768..945 coord: 979..1074
IPR012320	Stonin homology	PROSITE	PS51070	SHD	coord: 639..773 score: 16.651

Blast

[Close]

BLAST of TCONS_00058551-protein vs. Swiss-Prot (Human)
Match: STON2 (Stonin-2 OS=Homo sapiens GN=STON2 PE=1 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 1.211e-41
Identity = 123/478 (25.73%), Postives = 226/478 (47.28%), Query Frame = 0

Query:  628 LDEYPPTTQR----NSWKLWYRYPDKKMKMGRRRKWTPVIAHV-ENNFLKLNSLNGCTPEIKREYPLHPFCSFTAPTMHKGNKDGKVHSVKLQYVKYKEIRRVKPRLGVEHVPVFTPVVKLSCRDVIALRDFMKRIETVIRQIPTYRDE----DISYEREEIFIDSEDDCSYLVSGSDGVVIKYNITVQLKLRCFISGNPELKLFLNDVNNQDILSRTKEALSKEN---KRTNNWIVPENYEFNPCIDVKKSQDEGGVVFTPPDGCSFELLRFR-LRKRNPLPITVKSSLEVLALKSVHLKAEVRVNGDGKSIRHKRN-----NVILYIPVPSSWSKLFLKSRLVGRIAKYLSVK----SSLKSQRVSRASNARASFEISTGCARYEPAYGAIIWELGNLPIIRDGLPADATHTFQCTIELPFPLHIRDDFQPYSYLEFNIKQQMGSNVSVEEVLLSDGRVPEKWVCYRSNFTYRIEM 1083
            LD +PP + R    + W +  R P+KK  M  R  W P+   + +  +L+L    G      RE+ L      + P +   +++G++HS+++  V YKE ++ +P+  V H      V+KL   +      F+  ++  +  +P    +     ++Y  EEI +D  D+ S +VS  D  ++++++  ++ +  F+SG  E +L LN     DIL +  E + +++     T  WI      F+ C+D     +   ++F P D C FEL+RFR +     LP T++++  V   + V +++ +R++    + R         NV++  PVPS W K F +  ++G   K L  K    +S  S  V   S +     ++ G A+YE A+ +I+W +  LP       +   H F C +EL     +   F  +  +EF++     S  SV  + + D     KWV Y ++++Y++ +
Sbjct:  412 LDAHPPGSARSQPRDGWPMMLRIPEKKNIMSSRH-WGPIFVKLTDTGYLQLYYEQGLEKPF-REFKLEICHEISEPRLQNYDENGRIHSLRIDRVTYKEKKKYQPKPAVAHTAEREQVIKLGTTNYDDFLSFIHAVQDRLMDLPVLSMDLSTVGLNYLEEEITVDVRDEFSGIVSKGDNQILQHHVLTRIHILSFLSGLAECRLGLN-----DILVKGNEIVLRQDIMPTTTTKWIKLHECRFHGCVDEDVFHNSRVILFNPLDACRFELMRFRTVFAEKTLPFTLRTATSVNGAE-VEVQSWLRMSTGFSANRDPLTQVPCENVMIRYPVPSEWVKNFRRESVLGE--KSLKAKVNRGASFGSTSV---SGSEPVMRVTLGTAKYEHAFNSIVWRINRLPDKNSA--SGHPHCFFCHLELGSDREVPSRFANHVNVEFSMPTTSASKASVRSISVEDKTDVRKWVNYSAHYSYQVAL 874

The following BLAST results are available for this feature:

BLAST of TCONS_00058551-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00058551-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
STON2	1.211e-41	25.73	Stonin-2 OS=Homo sapiens GN=STON2 PE=1 SV=1	[more]

You are here

TCONS_00058551-protein (polypeptide) - C. hemisphaerica