TCONS_00058554-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00058554-protein
Unique NameTCONS_00058554-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length412

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00058554-protein ID=TCONS_00058554-protein|Name=TCONS_00058554-protein|organism=Clytia hemisphaerica|type=polypeptide|length=412bp
MGIAGKLENKSVHIHQDGGLSHVIHFNDGTTTRTPKCARCRNHGLDRELK
GHKEKCEFKDCTCRSCLVVVERQKITAARVAHLRQQRKVAAKRGVAIPNH
KYSHYNPLTEEEEYILSSPLQKKTTSGKISPTYHQGHHVTNRYYHHKPTW
TSYQPPTLAKNGSHPPYPSPPRRGEYPHHHHHHQPNVDKPGPIRYHHSPV
YHYQPYPVARYFPYHQPHYQHTSCHSPPRDSMRSSPASLPGSYIVPSPPS
IHDRRDVFRPIVIDPRRDDASESEDDDVIDVVMETRNKDGRHGNSKQRDD
KKIEALRVMFPDLDMRSLHDLYEDFDQDVQAAVEYMLFKKRKNEQEEFKL
NNQQQSSILTTTDSKRSLIHSPKTTTSSNNKPYYIDSLISKCQPKDNSDT
NMKSKISISSTA
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_036882XLOC_036882Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00058554TCONS_00058554Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001275DM_DNA-bd
Vocabulary: Molecular Function
TermDefinition
GO:0043565sequence-specific DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
molecular_function GO:0043565 sequence-specific DNA binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001275DM DNA-binding domainSMARTSM00301DM_3coord: 33..86
e-value: 2.8E-18
score: 76.7
IPR001275DM DNA-binding domainPFAMPF00751DMcoord: 33..78
e-value: 2.2E-18
score: 65.8
IPR001275DM DNA-binding domainGENE3D4.10.1040.10coord: 32..79
e-value: 1.4E-18
score: 66.1
IPR001275DM DNA-binding domainPROSITEPS40000DM_1coord: 37..66
IPR001275DM DNA-binding domainPROSITEPS50809DM_2coord: 37..84
score: 12.541
IPR001275DM DNA-binding domainSUPERFAMILY82927Cysteine-rich DNA binding domain, (DM domain)coord: 31..78
NoneNo IPR availableGENE3D1.10.8.10coord: 301..337
e-value: 8.4E-6
score: 25.2
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 220..239
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 154..189
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 350..412
NoneNo IPR availableCDDcd14279CUEcoord: 300..337
e-value: 1.16991E-5
score: 41.2998

Blast
[Close]
BLAST of TCONS_00058554-protein vs. Swiss-Prot (Human)
Match: DMRT3 (Doublesex- and mab-3-related transcription factor 3 OS=Homo sapiens GN=DMRT3 PE=1 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 9.653e-19
Identity = 35/54 (64.81%), Postives = 43/54 (79.63%), Query Frame = 0 
Query:   33 RTPKCARCRNHGLDRELKGHKEKCEFKDCTCRSCLVVVERQKITAARVAHLRQQ 86
            RTPKCARCRNHG+   LKGHK  C FKDCTC  C++++ERQ++ AA+VA  RQQ
Sbjct:   25 RTPKCARCRNHGVLSWLKGHKRYCRFKDCTCEKCILIIERQRVMAAQVALRRQQ 78
The following BLAST results are available for this feature:
BLAST of TCONS_00058554-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DMRT39.653e-1964.81Doublesex- and mab-3-related transcription factor ... [more]
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