TCONS_00058588-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00058588-protein
Unique NameTCONS_00058588-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length187

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00058588-protein ID=TCONS_00058588-protein|Name=TCONS_00058588-protein|organism=Clytia hemisphaerica|type=polypeptide|length=187bp
MEGHIKNLKLICRMCGLKSHQKDYKNPKSVMEYSAIIKQVFKLNVTEENE
SIFSKVLCKRCHMKLYRLKNKNLDIPPDELTSHGDSFFEFRPHSEECYVC
TLASKRGPGIKRPKLFNLKEEIKHLKGYTTLEIENEMHITDIDRLGKAIC
IKTLIIDVNEKTWKFHALNRYVSSPFLIDDVLLPSTI
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_036897XLOC_036897Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00058588TCONS_00058588Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR012934Znf_AD
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0005634 nucleus
molecular_function GO:0008270 zinc ion binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
ZOOM
x 1
POSITION
0
MEGHIKNLKLICRMCGLKSHQKDYKNPKSVMEYSAIIKQVFKLNVTEENESIFSKVLCKRCHMKLYRLKNKNLDIPPDELTSHGDSFFEFRPHSEECYVCTLASKRGPGIKRPKLFNLKEEIKHLKGYTTLEIENEMHITDIDRLGKAICIKTLIIDVNEKTWKFHALNRYVSSPFLIDDVLLPSTI20406080100120140160180Expect = 2.5E-9 / Score = 37.0Expect = 4.1E-5 / Score = 23.6SequencePF12560PF07776
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePFAMPF12560RAG1_imp_bdcoord: 28..121
e-value: 2.5E-9
score: 37.0
IPR012934Zinc finger, AD-typePFAMPF07776zf-ADcoord: 11..67
e-value: 4.1E-5
score: 23.6

Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00058588-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 0
ZOOM
x 1
POSITION
0
MEGHIKNLKLICRMCGLKSHQKDYKNPKSVMEYSAIIKQVFKLNVTEENESIFSKVLCKRCHMKLYRLKNKNLDIPPDELTSHGDSFFEFRPHSEECYVCTLASKRGPGIKRPKLFNLKEEIKHLKGYTTLEIENEMHITDIDRLGKAICIKTLIIDVNEKTWKFHALNRYVSSPFLIDDVLLPSTI20406080100120140160180Sequence
Match NameE-valueIdentityDescription
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